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GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

BACKGROUND: A large number of sensitive homology searches are required for mapping DNA sequence fragments to known protein sequences in public and private databases during metagenomic analysis. BLAST is currently used for this purpose, but its calculation speed is insufficient, especially for analyz...

Ausführliche Beschreibung

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Bibliographische Detailangaben
Hauptverfasser: Suzuki, Shuji, Ishida, Takashi, Kurokawa, Ken, Akiyama, Yutaka
Format: Artigo
Sprache:Inglês
Veröffentlicht: Public Library of Science 2012
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3344842/
https://ncbi.nlm.nih.gov/pubmed/22574135
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0036060
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