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Perfect Hamming code with a hash table for faster genome mapping

BACKGROUND: With the advent of next-generation sequencers, the growing demands to map short DNA sequences to a genome have promoted the development of fast algorithms and tools. The tools commonly used today are based on either a hash table or the suffix array/Burrow–Wheeler transform. These algorit...

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Detalhes bibliográficos
Main Authors: Takenaka, Yoichi, Seno, Shigeto, Matsuda, Hideo
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2011
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3333191/
https://ncbi.nlm.nih.gov/pubmed/22369457
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2164-12-S3-S8
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