i-rDNA: alignment-free algorithm for rapid in silico detection of ribosomal gene fragments from metagenomic sequence data sets

BACKGROUND: Obtaining accurate estimates of microbial diversity using rDNA profiling is the first step in most metagenomics projects. Consequently, most metagenomic projects spend considerable amounts of time, money and manpower for experimentally cloning, amplifying and sequencing the rDNA content...

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Hlavní autoři: Mohammed, Monzoorul Haque, Ghosh, Tarini Shankar, Chadaram, Sudha, Mande, Sharmila S
Médium: Artigo
Jazyk:Inglês
Vydáno: BioMed Central 2011
Témata:
Proceedings
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC3333171/
https://ncbi.nlm.nih.gov/pubmed/22369265
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2164-12-S3-S12
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