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STEME: efficient EM to find motifs in large data sets

MEME and many other popular motif finders use the expectation–maximization (EM) algorithm to optimize their parameters. Unfortunately, the running time of EM is linear in the length of the input sequences. This can prohibit its application to data sets of the size commonly generated by high-throughp...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Reid, John E., Wernisch, Lorenz
Format: Artigo
Sprache:Inglês
Veröffentlicht: Oxford University Press 2011
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3185442/
https://ncbi.nlm.nih.gov/pubmed/21785132
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkr574
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