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A Molecular Mechanics Approach to Modeling Protein-Ligand Interactions: Relative Binding Affinities in Congeneric Series

We introduce the “Prime-ligand” method for ranking ligands in congeneric series. The method employs a single scoring function, the OPLS-AA/GBSA molecular mechanics/implicit solvent model, for all stages of sampling and scoring. We evaluate the method using 12 test sets of congeneric series for which...

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Detalhes bibliográficos
Main Authors: Rapp, Chaya S., Kalyanaraman, Chakrapani, Schiffmiller, Aviva, Schoenbrun, Esther Leah, Jacobson, Matthew P.
Formato: Artigo
Idioma:Inglês
Publicado em: 2011
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3183355/
https://ncbi.nlm.nih.gov/pubmed/21780805
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ci200033n
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