A Computational Model for Predicting Experimental RNA and DNA Nearest-Neighbor Free Energy Rankings

Hydrogen-bonding, intra-strand base-stacking, and inter-strand base-stacking energies were calculated for RNA and DNA dimers at the MP2(full)/6-311G** level of theory. Standard A-form RNA and B-form DNA geometries from average fiber diffraction data were employed for all base monomer and dimer geome...

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Bibliographic Details
Main Authors: Johnson, Charles A., Bloomingdale, Richard J., Ponnusamy, Vikram E., Tillinghast, Conor A., Znosko, Brent M., Lewis, Michael
Format: Artigo
Language:Inglês
Published: 2011
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Article
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC3142330/
https://ncbi.nlm.nih.gov/pubmed/21619071
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/jp2012733
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