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KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2

Summary: Kalign2 is one of the fastest and most accurate methods for multiple alignments. However, in contrast to other methods Kalign2 does not allow externally supplied position specific gap penalties. Here, we present a modification to Kalign2, KalignP, so that it accepts such penalties. Further,...

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Detalhes bibliográficos
Main Authors: Shu, Nanjiang, Elofsson, Arne
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2011
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3106193/
https://ncbi.nlm.nih.gov/pubmed/21505030
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btr235
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