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Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA

Here, we present an update of the CHARMM27 all-atom additive force field for nucleic acids that improves the treatment of RNA molecules. The original CHARMM27 force field parameters exhibit enhanced Watson-Crick (WC) base pair opening which is not consistent with experiment while analysis of MD simu...

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Detalhes bibliográficos
Main Authors: Denning, Elizabeth J., Priyakumar, U. Deva, Nilsson, Lennart, MacKerell, Alexander D.
Formato: Artigo
Idioma:Inglês
Publicado em: 2011
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3082605/
https://ncbi.nlm.nih.gov/pubmed/21469161
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/jcc.21777
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