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HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

BACKGROUND: High-throughput sequencing of an organism's transcriptome, or RNA-Seq, is a valuable and versatile new strategy for capturing snapshots of gene expression. However, transcriptome sequencing creates a new class of alignment problem: mapping short reads that span exon-exon junctions b...

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Detalles Bibliográficos
Main Authors: Dimon, Michelle T., Sorber, Katherine, DeRisi, Joseph L.
Formato: Artigo
Idioma:Inglês
Publicado: Public Library of Science 2010
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC2975632/
https://ncbi.nlm.nih.gov/pubmed/21079731
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0013875
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