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An experimentally guided umbrella sampling protocol for biomolecules

We present a simple method for utilizing experimental data to improve the efficiency of numerical calculations of free energy profiles from molecular dynamics simulations. The method involves umbrella sampling simulations with restraining potentials based on a known approximate estimate of the free...

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Detalhes bibliográficos
Main Authors: Mills, Maria, Andricioaei, Ioan
Formato: Artigo
Idioma:Inglês
Publicado em: American Institute of Physics 2008
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC2736582/
https://ncbi.nlm.nih.gov/pubmed/19044944
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1063/1.2976440
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