Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis

BACKGROUND: Reliable annotation linking oligonucleotide probes to target genes is essential for functional biological analysis of microarray experiments. We used the IMAD, OligoRAP and sigReannot pipelines to update the annotation for the ARK-Genomics Chicken 20 K array as part of a joined EADGENE/S...

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Bibliografiske detaljer
Main Authors: Neerincx, Pieter BT, Casel, Pierrot, Prickett, Dennis, Nie, Haisheng, Watson, Michael, Leunissen, Jack AM, Groenen, Martien AM, Klopp, Christophe
Format: Artigo
Sprog:Inglês
Udgivet: BioMed Central 2009
Fag:
Research
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2712739/
https://ncbi.nlm.nih.gov/pubmed/19615109
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1753-6561-3-S4-S1
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