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CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing

Functional turnover of transcription factor binding sites (TFBSs), such as whole-motif loss or gain, are common events during genome evolution. Conventional probabilistic phylogenetic shadowing methods model the evolution of genomes only at nucleotide level, and lack the ability to capture the evolu...

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Bibliografische gegevens
Hoofdauteurs: Ray, Pradipta, Shringarpure, Suyash, Kolar, Mladen, Xing, Eric P.
Formaat: Artigo
Taal:Inglês
Gepubliceerd in: Public Library of Science 2008
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Online toegang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2396503/
https://ncbi.nlm.nih.gov/pubmed/18535663
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pcbi.1000090
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