Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

We consider the problem of predicting cis-regulatory modules without knowledge of motifs. We formulate this problem in a pragmatic setting, and create over 30 new data sets, using Drosophila modules, to use as a 'benchmark'. We propose two new methods for the problem, and evaluate these, a...

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Bibliografiske detaljer
Main Authors: Ivan, Andra, Halfon, Marc S, Sinha, Saurabh
Format: Artigo
Sprog:Inglês
Udgivet: BioMed Central 2008
Fag:
Method
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC2395258/
https://ncbi.nlm.nih.gov/pubmed/18226245
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/gb-2008-9-1-r22
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