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HIV-1 Protease Substrate Binding and Product Release Pathways Explored with Coarse-Grained Molecular Dynamics

We analyze the encounter of a peptide substrate with the native HIV-1 protease, the mechanism of substrate incorporation in the binding cleft, and the dissociation of products after substrate hydrolysis. To account for the substrate, we extend a coarse-grained model force field, which we previously...

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Detalhes bibliográficos
Main Authors: Trylska, Joanna, Tozzini, Valentina, Chang, Chia-en A., McCammon, J. Andrew
Formato: Artigo
Idioma:Inglês
Publicado em: Biophysical Society 2007
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC1877780/
https://ncbi.nlm.nih.gov/pubmed/17384072
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1529/biophysj.106.100560
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