Identifying repeat domains in large genomes

We present a graph-based method for the analysis of repeat families in a repeat library. We build a repeat domain graph that decomposes a repeat library into repeat domains, short subsequences shared by multiple repeat families, and reveals the mosaic structure of repeat families. Our method recover...

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Bibliografiske detaljer
Main Authors: Zhi, Degui, Raphael, Benjamin J, Price, Alkes L, Tang, Haixu, Pevzner, Pavel A
Format: Artigo
Sprog:Inglês
Udgivet: BioMed Central 2006
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Method
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC1431705/
https://ncbi.nlm.nih.gov/pubmed/16507140
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/gb-2006-7-1-r7
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