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A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
<p>Abstract</p> <p>Background</p> <p>Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algorithm for aligning a CM to an RNA sequence of length <it>N&l...
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| Main Author: | |
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| Format: | Artigo |
| Language: | Inglês |
| Published: |
BMC
2002-07-01
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| Series: | BMC Bioinformatics |
| Online Access: | http://www.biomedcentral.com/1471-2105/3/18 |
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