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A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

<p>Abstract</p> <p>Background</p> <p>Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algorithm for aligning a CM to an RNA sequence of length <it>N&l...

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Bibliografiske detaljer
Hovedforfatter: Eddy Sean R
Format: Artigo
Sprog:Inglês
Udgivet: BMC 2002-07-01
Serier:BMC Bioinformatics
Online adgang:http://www.biomedcentral.com/1471-2105/3/18
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