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KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

Genomic DNA is the best “unique identifier” for organisms. Alignment-free phylogenomic analysis, simple, fast, and efficient method to compare genome sequences, relies on looking at the distribution of small DNA sequence of a particular length, referred to as k-mer. The k-mer approach has been explo...

Whakaahuatanga katoa

I tiakina i:
Ngā kaituhi matua: Natapol Pornputtapong, Daniel A. Acheampong, Preecha Patumcharoenpol, Piroon Jenjaroenpun, Thidathip Wongsurawat, Se-Ran Jun, Suganya Yongkiettrakul, Nipa Chokesajjawatee, Intawat Nookaew
Hōputu: Artigo
Reo:Inglês
I whakaputaina: Frontiers Media S.A. 2020-09-01
Rangatū:Frontiers in Bioengineering and Biotechnology
Ngā marau:
k-mer
species identification
phylogenomics
comparative genomics
alignment-free
Urunga tuihono:https://www.frontiersin.org/article/10.3389/fbioe.2020.556413/full
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