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Nanopore signal deviations from pseudouridine modifications in RNA are sequence-specific: quantification requires dedicated synthetic controls

Abstract Chemical modifications to mRNA respond dynamically to environmental cues and are important modulators of gene expression. Nanopore direct RNA sequencing has been applied for assessing the presence of pseudouridine (ψ) modifications through basecalling errors and signal analysis. These appro...

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Bibliografski detalji
Glavni autori: Amr Makhamreh, Sepideh Tavakoli, Ali Fallahi, Xinqi Kang, Howard Gamper, Mohammad Nabizadehmashhadtoroghi, Miten Jain, Ya-Ming Hou, Sara H. Rouhanifard, Meni Wanunu
Format: Artigo
Jezik:Inglês
Izdano: Nature Portfolio 2024-09-01
Serija:Scientific Reports
Online pristup:https://doi.org/10.1038/s41598-024-72994-9
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