Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes

Metagenomic sequencing is a promising method that has the potential to revolutionize the world of pathogen detection and antimicrobial resistance (AMR) surveillance in food-producing environments. However, the analysis of the huge amount of data obtained requires performant bioinformatics tools and...

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Detalhes bibliográficos

Principais autores:	Mathieu Gand, Indre Navickaite, Lee-Julia Bartsch, Josephine Grützke, Søren Overballe-Petersen, Astrid Rasmussen, Saria Otani, Valeria Michelacci, Bosco Rodríguez Matamoros, Bruno González-Zorn, Michael S. M. Brouwer, Lisa Di Marcantonio, Bram Bloemen, Kevin Vanneste, Nancy H. C. J. Roosens, Manal AbuOun, Sigrid C. J. De Keersmaecker
Formato:	Artigo
Idioma:	Inglês
Publicado em:	Frontiers Media S.A. 2024-04-01
Colecção:	Frontiers in Microbiology
Assuntos:	metagenomics ONT bioinformatics pathogens antimicrobial resistance KMA
Acesso em linha:	https://www.frontiersin.org/articles/10.3389/fmicb.2024.1336532/full
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