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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

IntroductionShotgun metagenomics has previously proven effective in the investigation of foodborne outbreaks by providing rapid and comprehensive insights into the microbial contaminant. However, culture enrichment of the sample has remained a prerequisite, despite the potential impact on pathogen d...

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Principais autores: Florence E. Buytaers, Bavo Verhaegen, Tom Van Nieuwenhuysen, Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Format: Artigo
Sprog:Inglês
Udgivet: Frontiers Media S.A. 2024-03-01
Serier:Frontiers in Microbiology
Fag:
metagenomics
nanopore
adaptive sampling
Staphylococcus aureus
food
Online adgang:https://www.frontiersin.org/articles/10.3389/fmicb.2024.1330814/full
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