Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

IntroductionShotgun metagenomics has previously proven effective in the investigation of foodborne outbreaks by providing rapid and comprehensive insights into the microbial contaminant. However, culture enrichment of the sample has remained a prerequisite, despite the potential impact on pathogen d...

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Hlavní autoři:	Florence E. Buytaers, Bavo Verhaegen, Tom Van Nieuwenhuysen, Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Médium:	Artigo
Jazyk:	Inglês
Vydáno:	Frontiers Media S.A. 2024-03-01
Edice:	Frontiers in Microbiology
Témata:	metagenomics nanopore adaptive sampling Staphylococcus aureus food
On-line přístup:	https://www.frontiersin.org/articles/10.3389/fmicb.2024.1330814/full
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