Fast and accurate short-read alignment with hybrid hash-tree data structure

Abstract Rapidly increasing the amount of short-read data generated by NGSs (new-generation sequencers) calls for the development of fast and accurate read alignment programs. The programs based on the hash table (BLAST) and Burrows-Wheeler transform (bwa-mem) are used, and the latter is known to gi...

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Hlavní autoři:	Junichiro Makino, Toshikazu Ebisuzaki, Ryutaro Himeno, Yoshihide Hayashizaki
Médium:	Artigo
Jazyk:	Inglês
Vydáno:	BioMed Central 2024-10-01
Edice:	Genomics & Informatics
Témata:	Human whole genome analysis Short read Alignment (mapping) Variant calling Hash Tree
On-line přístup:	https://doi.org/10.1186/s44342-024-00012-5
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