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HolomiRA: a reproducible pipeline for miRNA binding site prediction in microbial genomes

Abstract Background Small RNAs, such as microRNAs (miRNAs), are candidates for mediating communication between the host and its microbiota, regulating bacterial gene expression and influencing microbiome functions and dynamics. Here, we introduce HolomiRA (Holobiome miRNA Affinity Predictor), a comp...

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Tallennettuna:
Päätekijät: Jennifer Jessica Bruscadin, Tainã Figueiredo Cardoso, Liliane Costa Conteville, Juliana Virginio da Silva, Adriana Mércia Guaratini Ibelli, Gabriel Alexander Colmenarez Pena, Thanny Porto, Priscila Silva Neubern de Oliveira, Bruno Gabriel Nascimento Andrade, Adhemar Zerlotini, Luciana Correia de Almeida Regitano
Aineistotyyppi: Artigo
Kieli:Inglês
Julkaistu: BMC 2025-10-01
Sarja:BMC Bioinformatics
Aiheet:
Holobiome
Host–pathogen interaction
Gene regulation
Linkit:https://doi.org/10.1186/s12859-025-06241-x
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