StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs

Current studies are shifting from the use of single linear references to representation of multiple genomes organised in pangenome graphs or variation graphs. Meanwhile, in metagenomic samples, resolving strain-level abundances is a major step in microbiome studies, as associations between strain va...

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Podrobná bibliografie

Hlavní autoři:	Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo
Médium:	Artigo
Jazyk:	Inglês
Vydáno:	PeerJ Inc. 2021-08-01
Edice:	PeerJ
Témata:	Metagenomics Variation graphs Strain-level abundances Read mapping
On-line přístup:	https://peerj.com/articles/11884.pdf
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