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K-mer-based machine learning method to classify LTR-retrotransposons in plant genomes

Every day more plant genomes are available in public databases and additional massive sequencing projects (i.e., that aim to sequence thousands of individuals) are formulated and released. Nevertheless, there are not enough automatic tools to analyze this large amount of genomic information. LTR ret...

Ausführliche Beschreibung

Gespeichert in:
Hauptverfasser: Simon Orozco-Arias, Mariana S. Candamil-Cortés, Paula A. Jaimes, Johan S. Piña, Reinel Tabares-Soto, Romain Guyot, Gustavo Isaza
Format: Artigo
Sprache:Inglês
Veröffentlicht: PeerJ Inc. 2021-05-01
Schriftenreihe:PeerJ
Schlagworte:
Transposable elements
LTR retrotransposons
Plant genomes
Machine learning
Classification
Free-alignment approach
Online-Zugang:https://peerj.com/articles/11456.pdf
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