Building a Better Fragment Library for De Novo Protein Structure Prediction

द्वारा de Oliveira, Saulo H. P., Shi, Jiye, Deane, Charlotte M.
में प्रकाशित PLoS One (2015)

RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold

द्वारा West, Clare E., de Oliveira, Saulo H. P., Deane, Charlotte M.
में प्रकाशित PLoS One (2019)

STCRDab: the structural T-cell receptor database

द्वारा Leem, Jinwoo, de Oliveira, Saulo H P, Krawczyk, Konrad, Deane, Charlotte M
में प्रकाशित Nucleic Acids Res (2018)

Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction

द्वारा de Oliveira, Saulo H P, Law, Eleanor C, Shi, Jiye, Deane, Charlotte M
में प्रकाशित Bioinformatics (2018)

qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps

द्वारा Riley, Blake T., Wankowicz, Stephanie A., de Oliveira, Saulo H. P., van Zundert, Gydo C. P., Hogan, Daniel W., Fraser, James S., Keedy, Daniel A., van den Bedem, Henry
में प्रकाशित Protein Sci (2020)

qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps

द्वारा van Zundert, Gydo C.P., Hudson, Brandi M., de Oliveira, Saulo H.P., Keedy, Daniel A., Fonseca, Rasmus, Heliou, Amelie, Suresh, Pooja, Borrelli, Kenneth, Day, Tyler, Fraser, James S., van den Bedem, Henry
में प्रकाशित J Med Chem (2018)

Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

द्वारा Dasgupta, Medhanjali, Budday, Dominik, de Oliveira, Saulo H. P., Madzelan, Peter, Marchany-Rivera, Darya, Seravalli, Javier, Hayes, Brandon, Sierra, Raymond G., Boutet, Sébastien, Hunter, Mark S., Alonso-Mori, Roberto, Batyuk, Alexander, Wierman, Jennifer, Lyubimov, Artem, Brewster, Aaron S., Sauter, Nicholas K., Applegate, Gregory A., Tiwari, Virendra K., Berkowitz, David B., Thompson, Michael C., Cohen, Aina E., Fraser, James S., Wall, Michael E., van den Bedem, Henry, Wilson, Mark A.
में प्रकाशित Proc Natl Acad Sci U S A (2019)