Machine Learning in Systems Biology

by d'Alché-Buc Florence, Wehenkel Louis
Published 2008-12-01

Machine Learning in Systems Biology

by d'Alché-Buc, Florence, Wehenkel, Louis
Published 2008

Inferring biological networks with output kernel trees

by Geurts, Pierre, Touleimat, Nizar, Dutreix, Marie, d'Alché-Buc, Florence
Published 2007

Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset

by Auliac, Cédric, Frouin, Vincent, Gidrol, Xavier, d'Alché-Buc, Florence
Published 2008

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks

by Lim, Néhémy, Şenbabaoğlu, Yasin, Michailidis, George, d’Alché-Buc, Florence
Published 2013

Improved Small Molecule Identification through Learning Combinations of Kernel Regression Models

by Brouard, Céline, Bassé, Antoine, d’Alché-Buc, Florence, Rousu, Juho
Published in Metabolites (2019)

CycSim—an online tool for exploring and experimenting with genome-scale metabolic models

by Le Fèvre, F., Smidtas, S., Combe, C., Durot, M., d'Alché-Buc, Florence, Schachter, V.
Published 2009

Fast metabolite identification with Input Output Kernel Regression

by Brouard, Céline, Shen, Huibin, Dührkop, Kai, d'Alché-Buc, Florence, Böcker, Sebastian, Rousu, Juho
Published in Bioinformatics (2016)

Learning a Markov Logic network for supervised gene regulatory network inference

by Brouard, Céline, Vrain, Christel, Dubois, Julie, Castel, David, Debily, Marie-Anne, d’Alché-Buc, Florence
Published 2013

Temporal clustering analysis of endothelial cell gene expression following exposure to a conventional radiotherapy dose fraction using Gaussian process clustering

by Heinonen, Markus, Milliat, Fabien, Benadjaoud, Mohamed Amine, François, Agnès, Buard, Valérie, Tarlet, Georges, d’Alché-Buc, Florence, Guipaud, Olivier
Published in PLoS One (2018)

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

by Chatagnon, Amandine, Veber, Philippe, Morin, Valérie, Bedo, Justin, Triqueneaux, Gérard, Sémon, Marie, Laudet, Vincent, d'Alché-Buc, Florence, Benoit, Gérard
Published in Nucleic Acids Res (2015)