Predator-Prey Patterns

Por Yorke, James A., Anderson, William N.
Publicado em 1973

QuorUM: An Error Corrector for Illumina Reads

Por Marçais, Guillaume, Yorke, James A., Zimin, Aleksey
Publicado no PLoS One (2015)

Chaos : in introduction to dynamical systems /

Por Alligood, Kathleen T., Sauer, Tim D., Yorke, James A.
Publicado em c199

Duplication count distributions in DNA sequences

Por Sindi, Suzanne S., Hunt, Brian R., Yorke, James A.
Publicado em 2008

Figaro: a novel statistical method for vector sequence removal

Por White, James Robert, Roberts, Michael, Yorke, James A., Pop, Mihai
Publicado em 2008

Evolution of transcriptional networks in yeast: alternative teams of transcriptional factors for different species

Por Muñoz, Adriana, Santos Muñoz, Daniella, Zimin, Aleksey, Yorke, James A.
Publicado no BMC Genomics (2016)

Testing for Basins of Wada

Por Daza, Alvar, Wagemakers, Alexandre, Sanjuán, Miguel A. F., Yorke, James A.
Publicado no Sci Rep (2015)

Partially controlling transient chaos in the Lorenz equations

Por Capeáns, Rubén, Sabuco, Juan, Sanjuán, Miguel A. F., Yorke, James A.
Publicado no Philos Trans A Math Phys Eng Sci (2017)

The MaSuRCA genome assembler

Por Zimin, Aleksey V., Marçais, Guillaume, Puiu, Daniela, Roberts, Michael, Salzberg, Steven L., Yorke, James A.
Publicado em 2013

Mis-Assembled “Segmental Duplications” in Two Versions of the Bos taurus Genome

Por Zimin, Aleksey V., Kelley, David R., Roberts, Michael, Marçais, Guillaume, Salzberg, Steven L., Yorke, James A.
Publicado em 2012

Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

Por Roberts, Michael, Zimin, Aleksey V., Hayes, Wayne, Hunt, Brian R., Ustun, Cevat, White, James R., Havlak, Paul, Yorke, James
Publicado em 2008

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

Por Zimin, Aleksey V., Puiu, Daniela, Luo, Ming-Cheng, Zhu, Tingting, Koren, Sergey, Marçais, Guillaume, Yorke, James A., Dvořák, Jan, Salzberg, Steven L.
Publicado no Genome Res (2017)

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

Por Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.
Publicado no Gigascience (2017)

Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

Por Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.
Publicado no Gigascience (2017)

GAGE: A critical evaluation of genome assemblies and assembly algorithms

Por Salzberg, Steven L., Phillippy, Adam M., Zimin, Aleksey, Puiu, Daniela, Magoc, Tanja, Koren, Sergey, Treangen, Todd J., Schatz, Michael C., Delcher, Arthur L., Roberts, Michael, Marçais, Guillaume, Pop, Mihai, Yorke, James A.
Publicado em 2012

A whole-genome assembly of the domestic cow, Bos taurus

Por Zimin, Aleksey V, Delcher, Arthur L, Florea, Liliana, Kelley, David R, Schatz, Michael C, Puiu, Daniela, Hanrahan, Finnian, Pertea, Geo, Van Tassell, Curtis P, Sonstegard, Tad S, Marçais, Guillaume, Roberts, Michael, Subramanian, Poorani, Yorke, James A, Salzberg, Steven L
Publicado em 2009

Sequencing and Assembly of the 22-Gb Loblolly Pine Genome

Por Zimin, Aleksey, Stevens, Kristian A., Crepeau, Marc W., Holtz-Morris, Ann, Koriabine, Maxim, Marçais, Guillaume, Puiu, Daniela, Roberts, Michael, Wegrzyn, Jill L., de Jong, Pieter J., Neale, David B., Salzberg, Steven L., Yorke, James A., Langley, Charles H.
Publicado em 2014

A new rhesus macaque assembly and annotation for next-generation sequencing analyses

Por Zimin, Aleksey V, Cornish, Adam S, Maudhoo, Mnirnal D, Gibbs, Robert M, Zhang, Xiongfei, Pandey, Sanjit, Meehan, Daniel T, Wipfler, Kristin, Bosinger, Steven E, Johnson, Zachary P, Tharp, Gregory K, Marçais, Guillaume, Roberts, Michael, Ferguson, Betsy, Fox, Howard S, Treangen, Todd, Salzberg, Steven L, Yorke, James A, Norgren,, Robert B
Publicado em 2014

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae

Por Neale, David B., McGuire, Patrick E., Wheeler, Nicholas C., Stevens, Kristian A., Crepeau, Marc W., Cardeno, Charis, Zimin, Aleksey V., Puiu, Daniela, Pertea, Geo M., Sezen, U. Uzay, Casola, Claudio, Koralewski, Tomasz E., Paul, Robin, Gonzalez-Ibeas, Daniel, Zaman, Sumaira, Cronn, Richard, Yandell, Mark, Holt, Carson, Langley, Charles H., Yorke, James A., Salzberg, Steven L., Wegrzyn, Jill L.
Publicado no G3 (Bethesda) (2017)

Sequence of the Sugar Pine Megagenome

Por Stevens, Kristian A., Wegrzyn, Jill L., Zimin, Aleksey, Puiu, Daniela, Crepeau, Marc, Cardeno, Charis, Paul, Robin, Gonzalez-Ibeas, Daniel, Koriabine, Maxim, Holtz-Morris, Ann E., Martínez-García, Pedro J., Sezen, Uzay U., Marçais, Guillaume, Jermstad, Kathy, McGuire, Patrick E., Loopstra, Carol A., Davis, John M., Eckert, Andrew, de Jong, Pieter, Yorke, James A., Salzberg, Steven L., Neale, David B., Langley, Charles H.
Publicado no Genetics (2016)