Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

by Barty, Anton, Kirian, Richard A., Maia, Filipe R. N. C., Hantke, Max, Yoon, Chun Hong, White, Thomas A., Chapman, Henry
Published 2014

Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters

by Su, Zhen, Dasgupta, Medhanjali, Poitevin, Frédéric, Mathews, Irimpan I., van den Bedem, Henry, Wall, Michael E., Yoon, Chun Hong, Wilson, Mark A.
Published in Struct Dyn (2021)

A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser

by Yoon, Chun Hong, Yurkov, Mikhail V., Schneidmiller, Evgeny A., Samoylova, Liubov, Buzmakov, Alexey, Jurek, Zoltan, Ziaja, Beata, Santra, Robin, Loh, N. Duane, Tschentscher, Thomas, Mancuso, Adrian P.
Published in Sci Rep (2016)

OnDA: online data analysis and feedback for serial X-ray imaging

by Mariani, Valerio, Morgan, Andrew, Yoon, Chun Hong, Lane, Thomas J., White, Thomas A., O’Grady, Christopher, Kuhn, Manuela, Aplin, Steve, Koglin, Jason, Barty, Anton, Chapman, Henry N.
Published in J Appl Crystallogr (2016)

Evaluation of the performance of classification algorithms for XFEL single-particle imaging data

by Shi, Yingchen, Yin, Ke, Tai, Xuecheng, DeMirci, Hasan, Hosseinizadeh, Ahmad, Hogue, Brenda G., Li, Haoyuan, Ourmazd, Abbas, Schwander, Peter, Vartanyants, Ivan A., Yoon, Chun Hong, Aquila, Andrew, Liu, Haiguang
Published in IUCrJ (2019)

Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature

by I Ciftci, Halil, G Sierra, Raymond, Yoon, Chun Hong, Su, Zhen, Tateishi, Hiroshi, Koga, Ryoko, Kotaro, Koiwai, Yumoto, Fumiaki, Senda, Toshiya, Liang, Mengling, Wakatsuki, Soichi, Otsuka, Masami, Fujita, Mikako, DeMirci, Hasan
Published in Int J Mol Sci (2019)

Recent developments in CrystFEL

by White, Thomas A., Mariani, Valerio, Brehm, Wolfgang, Yefanov, Oleksandr, Barty, Anton, Beyerlein, Kenneth R., Chervinskii, Fedor, Galli, Lorenzo, Gati, Cornelius, Nakane, Takanori, Tolstikova, Alexandra, Yamashita, Keitaro, Yoon, Chun Hong, Diederichs, Kay, Chapman, Henry N.
Published in J Appl Crystallogr (2016)

Start-to-end simulation of single-particle imaging using ultra-short pulses at the European X-ray Free-Electron Laser

by Fortmann-Grote, Carsten, Buzmakov, Alexey, Jurek, Zoltan, Loh, Ne-Te Duane, Samoylova, Liubov, Santra, Robin, Schneidmiller, Evgeny A., Tschentscher, Thomas, Yakubov, Sergey, Yoon, Chun Hong, Yurkov, Michael V., Ziaja-Motyka, Beata, Mancuso, Adrian P.
Published in IUCrJ (2017)

Room-temperature macromolecular serial crystallography using synchrotron radiation

by Stellato, Francesco, Oberthür, Dominik, Liang, Mengning, Bean, Richard, Gati, Cornelius, Yefanov, Oleksandr, Barty, Anton, Burkhardt, Anja, Fischer, Pontus, Galli, Lorenzo, Kirian, Richard A., Meyer, Jan, Panneerselvam, Saravanan, Yoon, Chun Hong, Chervinskii, Fedor, Speller, Emily, White, Thomas A., Betzel, Christian, Meents, Alke, Chapman, Henry N.
Published 2014

Serial femtosecond crystallography datasets from G protein-coupled receptors

by White, Thomas A., Barty, Anton, Liu, Wei, Ishchenko, Andrii, Zhang, Haitao, Gati, Cornelius, Zatsepin, Nadia A., Basu, Shibom, Oberthür, Dominik, Metz, Markus, Beyerlein, Kenneth R., Yoon, Chun Hong, Yefanov, Oleksandr M., James, Daniel, Wang, Dingjie, Messerschmidt, Marc, Koglin, Jason E., Boutet, Sébastien, Weierstall, Uwe, Cherezov, Vadim
Published in Sci Data (2016)

Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency

by Yun, Ji-Hye, Li, Xuanxuan, Park, Jae-Hyun, Wang, Yang, Ohki, Mio, Jin, Zeyu, Lee, Wonbin, Park, Sam-Yong, Hu, Hao, Li, Chufeng, Zatsepin, Nadia, Hunter, Mark S., Sierra, Raymond G., Koralek, Jake, Yoon, Chun Hong, Cho, Hyun-Soo, Weierstall, Uwe, Tang, Leihan, Liu, Haiguang, Lee, Weontae
Published in J Biol Chem (2019)

Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser

by Hunter, Mark S., Yoon, Chun Hong, DeMirci, Hasan, Sierra, Raymond G., Dao, E. Han, Ahmadi, Radman, Aksit, Fulya, Aquila, Andrew L., Ciftci, Halilibrahim, Guillet, Serge, Hayes, Matt J., Lane, Thomas J., Liang, Meng, Lundström, Ulf, Koglin, Jason E., Mgbam, Paul, Rao, Yashas, Zhang, Lindsey, Wakatsuki, Soichi, Holton, James M., Boutet, Sébastien
Published in Nat Commun (2016)

X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature

by Hutchison, Christopher D. M., Cordon-Preciado, Violeta, Morgan, Rhodri M. L., Nakane, Takanori, Ferreira, Josie, Dorlhiac, Gabriel, Sanchez-Gonzalez, Alvaro, Johnson, Allan S., Fitzpatrick, Ann, Fare, Clyde, Marangos, Jon P., Yoon, Chun Hong, Hunter, Mark S., DePonte, Daniel P., Boutet, Sébastien, Owada, Shigeki, Tanaka, Rie, Tono, Kensuke, Iwata, So, van Thor, Jasper J.
Published in Int J Mol Sci (2017)

Single-particle imaging without symmetry constraints at an X-ray free-electron laser

by Rose, Max, Bobkov, Sergey, Ayyer, Kartik, Kurta, Ruslan P., Dzhigaev, Dmitry, Kim, Young Yong, Morgan, Andrew J., Yoon, Chun Hong, Westphal, Daniel, Bielecki, Johan, Sellberg, Jonas A., Williams, Garth, Maia, Filipe R.N.C., Yefanov, Olexander M., Ilyin, Vyacheslav, Mancuso, Adrian P., Chapman, Henry N., Hogue, Brenda G., Aquila, Andrew, Barty, Anton, Vartanyants, Ivan A.
Published in IUCrJ (2018)

Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin

by Yoon, Chun Hong, DeMirci, Hasan, Sierra, Raymond G., Dao, E. Han, Ahmadi, Radman, Aksit, Fulya, Aquila, Andrew L., Batyuk, Alexander, Ciftci, Halilibrahim, Guillet, Serge, Hayes, Matt J., Hayes, Brandon, Lane, Thomas J., Liang, Meng, Lundström, Ulf, Koglin, Jason E., Mgbam, Paul, Rao, Yashas, Rendahl, Theodore, Rodriguez, Evan, Zhang, Lindsey, Wakatsuki, Soichi, Boutet, Sébastien, Holton, James M., Hunter, Mark S.
Published in Sci Data (2017)

MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography

by Clabbers, Max T. B., Holmes, Susannah, Muusse, Timothy W., Vajjhala, Parimala R., Thygesen, Sara J., Malde, Alpeshkumar K., Hunter, Dominic J. B., Croll, Tristan I., Flueckiger, Leonie, Nanson, Jeffrey D., Rahaman, Md. Habibur, Aquila, Andrew, Hunter, Mark S., Liang, Mengning, Yoon, Chun Hong, Zhao, Jingjing, Zatsepin, Nadia A., Abbey, Brian, Sierecki, Emma, Gambin, Yann, Stacey, Katryn J., Darmanin, Connie, Kobe, Bostjan, Xu, Hongyi, Ve, Thomas
Published in Nat Commun (2021)

An advanced workflow for single-particle imaging with the limited data at an X-ray free-electron laser

by Assalauova, Dameli, Kim, Young Yong, Bobkov, Sergey, Khubbutdinov, Ruslan, Rose, Max, Alvarez, Roberto, Andreasson, Jakob, Balaur, Eugeniu, Contreras, Alice, DeMirci, Hasan, Gelisio, Luca, Hajdu, Janos, Hunter, Mark S., Kurta, Ruslan P., Li, Haoyuan, McFadden, Matthew, Nazari, Reza, Schwander, Peter, Teslyuk, Anton, Walter, Peter, Xavier, P. Lourdu, Yoon, Chun Hong, Zaare, Sahba, Ilyin, Viacheslav A., Kirian, Richard A., Hogue, Brenda G., Aquila, Andrew, Vartanyants, Ivan A.
Published in IUCrJ (2020)

Analysis of XFEL serial diffraction data from individual crystalline fibrils

by Wojtas, David H., Ayyer, Kartik, Liang, Mengning, Mossou, Estelle, Romoli, Filippo, Seuring, Carolin, Beyerlein, Kenneth R., Bean, Richard J., Morgan, Andrew J., Oberthuer, Dominik, Fleckenstein, Holger, Heymann, Michael, Gati, Cornelius, Yefanov, Oleksandr, Barthelmess, Miriam, Ornithopoulou, Eirini, Galli, Lorenzo, Xavier, P. Lourdu, Ling, Wai Li, Frank, Matthias, Yoon, Chun Hong, White, Thomas A., Bajt, Saša, Mitraki, Anna, Boutet, Sebastien, Aquila, Andrew, Barty, Anton, Forsyth, V. Trevor, Chapman, Henry N., Millane, Rick P.
Published in IUCrJ (2017)

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses

by Kurta, Ruslan P., Donatelli, Jeffrey J., Yoon, Chun Hong, Berntsen, Peter, Bielecki, Johan, Daurer, Benedikt J., DeMirci, Hasan, Fromme, Petra, Hantke, Max Felix, Maia, Filipe R. N. C., Munke, Anna, Nettelblad, Carl, Pande, Kanupriya, Reddy, Hemanth K. N., Sellberg, Jonas A., Sierra, Raymond G., Svenda, Martin, van der Schot, Gijs, Vartanyants, Ivan A., Williams, Garth J., Xavier, P. Lourdu, Aquila, Andrew, Zwart, Peter H., Mancuso, Adrian P.
Published in Phys Rev Lett (2017)

Structural basis for bifunctional peptide recognition at human δ-Opioid receptor

by Fenalti, Gustavo, Zatsepin, Nadia A., Betti, Cecilia, Giguere, Patrick, Han, Gye Won, Ishchenko, Andrii, Liu, Wei, Guillemyn, Karel, Zhang, Haitao, James, Daniel, Wang, Dingjie, Weierstall, Uwe, Spence, John C.H., Boutet, Sébastien, Messerschmidt, Marc, Williams, Garth J., Gati, Cornelius, Yefanov, Oleksandr M., White, Thomas A., Oberthuer, Dominik, Metz, Markus, Yoon, Chun Hong, Barty, Anton, Chapman, Henry N., Basu, Shibom, Coe, Jesse, Conrad, Chelsie E., Fromme, Raimund, Fromme, Petra, Tourwé, Dirk, Schiller, Peter W., Roth, Bryan L., Ballet, Steven, Katritch, Vsevolod, Stevens, Raymond C., Cherezov, Vadim
Published in Nat Struct Mol Biol (2015)