Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?

Por Hartmann, Stefanie, Vision, Todd J
Publicado em 2008

Open data for evolutionary synthesis: an introduction to the NESCent collection

Por Vision, Todd J., Cranston, Karen
Publicado no Sci Data (2014)

Data reuse and the open data citation advantage

Por Piwowar, Heather A., Vision, Todd J.
Publicado em 2013

Improving Quantitative Trait Loci Mapping Resolution in Experimental Crosses by the Use of Genotypically Selected Samples

Por Xu, Zongli, Zou, Fei, Vision, Todd J.
Publicado em 2005

Phytome: a platform for plant comparative genomics

Por Hartmann, Stefanie, Lu, Dihui, Phillips, Jason, Vision, Todd J.
Publicado em 2006

The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus

Por Flagel, Lex E., Willis, John H., Vision, Todd J.
Publicado em 2013

Contrasting Modes of Diversification in the Aux/IAA and ARF Gene Families

Por Remington, David L., Vision, Todd J., Guilfoyle, Thomas J., Reed, Jason W.
Publicado em 2004

Tracking the evolution of alternatively spliced exons within the Dscam family

Por Crayton, Mack E, Powell, Bradford C, Vision, Todd J, Giddings, Morgan C
Publicado em 2006

A hierarchical model for incomplete alignments in phylogenetic inference

Por Cheng, Fuxia, Hartmann, Stefanie, Gupta, Mayetri, Ibrahim, Joseph G., Vision, Todd J.
Publicado em 2009

Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees

Por Burleigh, J. Gordon, Bansal, Mukul S., Eulenstein, Oliver, Hartmann, Stefanie, Wehe, André, Vision, Todd J.
Publicado em 2011

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

Por Balhoff, James P, Dahdul, Wasila M, Dececchi, T Alexander, Lapp, Hilmar, Mabee, Paula M, Vision, Todd J
Publicado no J Biomed Semantics (2014)

Compensatory Evolution in RNA Secondary Structures Increases Substitution Rate Variation among Sites

Por Knies, Jennifer L., Dang, Kristen K., Vision, Todd J., Hoffman, Noah G., Swanstrom, Ronald, Burch, Christina L.
Publicado em 2008

Identification and Characterization of Aluminum Tolerance Loci in Arabidopsis (Landsberg erecta × Columbia) by Quantitative Trait Locus Mapping. A Physiologically Simple But Gene...

Por Hoekenga, Owen A., Vision, Todd J., Shaff, Jon E., Monforte, Antonio J., Lee, Gung Pyo, Howell, Stephen H., Kochian, Leon V.
Publicado em 2003

Phenex: Ontological Annotation of Phenotypic Diversity

Por Balhoff, James P., Dahdul, Wasila M., Kothari, Cartik R., Lapp, Hilmar, Lundberg, John G., Mabee, Paula, Midford, Peter E., Westerfield, Monte, Vision, Todd J.
Publicado em 2010

The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Por Dahdul, Wasila M., Lundberg, John G., Midford, Peter E., Balhoff, James P., Lapp, Hilmar, Vision, Todd J., Haendel, Melissa A., Westerfield, Monte, Mabee, Paula M.
Publicado em 2010

Systematic Identification of Balanced Transposition Polymorphisms in Saccharomyces cerevisiae

Por Faddah, Dina A., Ganko, Eric W., McCoach, Caroline, Pickrell, Joseph K., Hanlon, Sean E., Mann, Frederick G., Mieczkowska, Joanna O., Jones, Corbin D., Lieb, Jason D., Vision, Todd J.
Publicado em 2009

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

Por Edmunds, Richard C., Su, Baofeng, Balhoff, James P., Eames, B. Frank, Dahdul, Wasila M., Lapp, Hilmar, Lundberg, John G., Vision, Todd J., Dunham, Rex A., Mabee, Paula M., Westerfield, Monte
Publicado no Mol Biol Evol (2016)

Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

Por Dahdul, Wasila M., Balhoff, James P., Engeman, Jeffrey, Grande, Terry, Hilton, Eric J., Kothari, Cartik, Lapp, Hilmar, Lundberg, John G., Midford, Peter E., Vision, Todd J., Westerfield, Monte, Mabee, Paula M.
Publicado em 2010

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Por Midford, Peter E, Dececchi, Thomas Alex, Balhoff, James P, Dahdul, Wasila M, Ibrahim, Nizar, Lapp, Hilmar, Lundberg, John G, Mabee, Paula M, Sereno, Paul C, Westerfield, Monte, Vision, Todd J, Blackburn, David C
Publicado em 2013

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

Por Lapp, Hilmar, Bala, Sendu, Balhoff, James P., Bouck, Amy, Goto, Naohisa, Holder, Mark, Holland, Richard, Holloway, Alisha, Katayama, Toshiaki, Lewis, Paul O., Mackey, Aaron J., Osborne, Brian I., Piel, William H., Kosakovsky Pond, Sergei L., Poon, Art F.Y., Qiu, Wei-Gang, Stajich, Jason E., Stoltzfus, Arlin, Thierer, Tobias, Vilella, Albert J., Vos, Rutger A., Zmasek, Christian M., Zwickl, Derrick J., Vision, Todd J.
Publicado em 2007