Comment on ‘Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants’: the importance of taking the GO graph structure into account

Autor Van Bel, Michiel, Vandepoele, Klaas
Vydáno v Bioinformatics (2020)

A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants

Autor Van de Velde, Jan, Van Bel, Michiel, Vaneechoutte, Dries, Vandepoele, Klaas
Vydáno v Plant Physiol (2016)

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

Autor Van Bel, Michiel, Proost, Sebastian, Van Neste, Christophe, Deforce, Dieter, Van de Peer, Yves, Vandepoele, Klaas
Vydáno 2013

Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity

Autor Tasdighian, Setareh, Van Bel, Michiel, Li, Zhen, Van de Peer, Yves, Carretero-Paulet, Lorenzo, Maere, Steven
Vydáno v Plant Cell (2017)

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform(1)([W])

Autor Van Bel, Michiel, Proost, Sebastian, Wischnitzki, Elisabeth, Movahedi, Sara, Scheerlinck, Christopher, Van de Peer, Yves, Vandepoele, Klaas
Vydáno 2012

Proteome Profiling of Wheat Shoots from Different Cultivars

Autor Vu, Lam Dai, Verstraeten, Inge, Stes, Elisabeth, Van Bel, Michiel, Coppens, Frederik, Gevaert, Kris, De Smet, Ive
Vydáno v Front Plant Sci (2017)

PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants

Autor Proost, Sebastian, Van Bel, Michiel, Sterck, Lieven, Billiau, Kenny, Van Parys, Thomas, Van de Peer, Yves, Vandepoele, Klaas
Vydáno 2009

PLAZA 3.0: an access point for plant comparative genomics

Autor Proost, Sebastian, Van Bel, Michiel, Vaneechoutte, Dries, Van de Peer, Yves, Inzé, Dirk, Mueller-Roeber, Bernd, Vandepoele, Klaas
Vydáno v Nucleic Acids Res (2014)

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions

Autor Schmidt, Martin, Van Bel, Michiel, Woloszynska, Magdalena, Slabbinck, Bram, Martens, Cindy, De Block, Marc, Coppens, Frederik, Van Lijsebettens, Mieke
Vydáno v BMC Plant Biol (2017)

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics

Autor Van Bel, Michiel, Diels, Tim, Vancaester, Emmelien, Kreft, Lukasz, Botzki, Alexander, Van de Peer, Yves, Coppens, Frederik, Vandepoele, Klaas
Vydáno v Nucleic Acids Res (2018)

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements

Autor De Witte, Dieter, Van de Velde, Jan, Decap, Dries, Van Bel, Michiel, Audenaert, Pieter, Demeester, Piet, Dhoedt, Bart, Vandepoele, Klaas, Fostier, Jan
Vydáno v Bioinformatics (2015)

Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth

Autor Vercruysse, Jasmien, Van Bel, Michiel, Osuna‐Cruz, Cristina M., Kulkarni, Shubhada R., Storme, Véronique, Nelissen, Hilde, Gonzalez, Nathalie, Inzé, Dirk, Vandepoele, Klaas
Vydáno v Plant Biotechnol J (2019)

A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants

Autor Olvera-Carrillo, Yadira, Van Bel, Michiel, Van Hautegem, Tom, Fendrych, Matyáš, Huysmans, Marlies, Simaskova, Maria, van Durme, Matthias, Buscaill, Pierre, Rivas, Susana, S. Coll, Nuria, Coppens, Frederik, Maere, Steven, Nowack, Moritz K.
Vydáno v Plant Physiol (2015)

Drought Tolerance Conferred to Sugarcane by Association with Gluconacetobacter diazotrophicus: A Transcriptomic View of Hormone Pathways

Autor Vargas, Lívia, Santa Brígida, Ailton B., Mota Filho, José P., de Carvalho, Thais G., Rojas, Cristian A., Vaneechoutte, Dries, Van Bel, Michiel, Farrinelli, Laurent, Ferreira, Paulo C. G., Vandepoele, Klaas, Hemerly, Adriana S.
Vydáno v PLoS One (2014)

It’s Time for Some “Site”-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana

Autor Walton, Alan, Stes, Elisabeth, Cybulski, Nicolas, Van Bel, Michiel, Iñigo, Sabrina, Durand, Astrid Nagels, Timmerman, Evy, Heyman, Jefri, Pauwels, Laurens, De Veylder, Lieven, Goossens, Alain, De Smet, Ive, Coppens, Frederik, Goormachtig, Sofie, Gevaert, Kris
Vydáno v Plant Cell (2016)

Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds

Autor Del Cortona, Andrea, Jackson, Christopher J., Bucchini, François, Van Bel, Michiel, D’hondt, Sofie, Škaloud, Pavel, Delwiche, Charles F., Knoll, Andrew H., Raven, John A., Verbruggen, Heroen, Vandepoele, Klaas, De Clerck, Olivier, Leliaert, Frederik
Vydáno v Proc Natl Acad Sci U S A (2020)

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

Autor Moreau, Hervé, Verhelst, Bram, Couloux, Arnaud, Derelle, Evelyne, Rombauts, Stephane, Grimsley, Nigel, Van Bel, Michiel, Poulain, Julie, Katinka, Michaël, Hohmann-Marriott, Martin F, Piganeau, Gwenael, Rouzé, Pierre, Da Silva, Corinne, Wincker, Patrick, Van de Peer, Yves, Vandepoele, Klaas
Vydáno 2012

Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf

Autor Nelissen, Hilde, Eeckhout, Dominique, Demuynck, Kirin, Persiau, Geert, Walton, Alan, van Bel, Michiel, Vervoort, Marieke, Candaele, Jasper, De Block, Jolien, Aesaert, Stijn, Van Lijsebettens, Mieke, Goormachtig, Sofie, Vandepoele, Klaas, Van Leene, Jelle, Muszynski, Michael, Gevaert, Kris, Inzé, Dirk, De Jaeger, Geert
Vydáno v Plant Cell (2015)

PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root

Autor Yue, Kun, Sandal, Priyanka, Williams, Elisabeth L., Murphy, Evan, Stes, Elisabeth, Nikonorova, Natalia, Ramakrishna, Priya, Czyzewicz, Nathan, Montero-Morales, Laura, Kumpf, Robert, Lin, Zhefeng, van de Cotte, Brigitte, Iqbal, Mudassar, Van Bel, Michiel, Van De Slijke, Eveline, Meyer, Matthew R., Gadeyne, Astrid, Zipfel, Cyril, De Jaeger, Geert, Van Montagu, Marc, Van Damme, Daniël, Gevaert, Kris, Rao, A. Gururaj, Beeckman, Tom, De Smet, Ive
Vydáno v Proc Natl Acad Sci U S A (2016)

Toward community standards in the quest for orthologs

Autor Dessimoz, Christophe, Gabaldón, Toni, Roos, David S., Sonnhammer, Erik L. L., Herrero, Javier, Altenhoff, Adrian, Apweiler, Rolf, Ashburner, Michael, Blake, Judith, Boeckmann, Brigitte, Bridge, Alan, Bruford, Elspeth, Cherry, Mike, Conte, Matthieu, Dannie, Durand, Datta, Ruchira, Dessimoz, Christophe, Domelevo Entfellner, Jean-Baka, Ebersberger, Ingo, Gabaldón, Toni, Galperin, Michael, Herrero, Javier, Joseph, Jacob, Koestler, Tina, Kriventseva, Evgenia, Lecompte, Odile, Leunissen, Jack, Lewis, Suzanna, Linard, Benjamin, Livstone, Michael S., Lu, Hui-Chun, Martin, Maria, Mazumder, Raja, Messina, David, Miele, Vincent, Muffato, Matthieu, Perrière, Guy, Punta, Marco, Roos, David, Rouard, Mathieu, Schmitt, Thomas, Schreiber, Fabian, Silva, Alan, Sjölander, Kimmen, Škunca, Nives, Sonnhammer, Erik, Stanley, Eleanor, Szklarczyk, Radek, Thomas, Paul, Uchiyama, Ikuo, Van Bel, Michiel, Vandepoele, Klaas, Vilella, Albert J., Yates, Andrew, Zdobnov, Evgeny
Vydáno 2012