Low-resolution structural modeling of protein interactome

по Vakser, Ilya A
Опубликовано 2013

Protein-Protein Docking: From Interaction to Interactome

по Vakser, Ilya A.
Опубликовано 2014

Challenges in Protein Docking

по Vakser, Ilya A.
Опубликовано в: Curr Opin Struct Biol (2020)

GRAMM-X public web server for protein–protein docking

по Tovchigrechko, Andrey, Vakser, Ilya A.
Опубликовано 2006

Shorter side chains optimize helix–helix packing

по Jiang, Sulin, Vakser, Ilya A.
Опубликовано 2004

How common is the funnel-like energy landscape in protein-protein interactions?

по Tovchigrechko, Andrei, Vakser, Ilya A.
Опубликовано 2001

DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking

по Liu, Shiyong, Vakser, Ilya A
Опубликовано 2011

Chasing Funnels on Protein-Protein Energy Landscapes at Different Resolutions

по Ruvinsky, Anatoly M., Vakser, Ilya A.
Опубликовано 2008

The ruggedness of protein–protein energy landscape and the cutoff for 1/r(n) potentials

по Ruvinsky, Anatoly M., Vakser, Ilya A.
Опубликовано 2009

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling

по Kundrotas, Petras J., Vakser, Ilya A.
Опубликовано 2010

Sequence composition and environment effects on residue fluctuations in protein structures

по Ruvinsky, Anatoly M., Vakser, Ilya A.
Опубликовано 2010

Protein–protein alternative binding modes do not overlap

по Kundrotas, Petras J, Vakser, Ilya A
Опубликовано 2013

Global and local structural similarity in protein–protein complexes: Implications for template-based docking

по Kundrotas, Petras J., Vakser, Ilya A.
Опубликовано в: Proteins (2013)

The role of geometric complementarity in secondary structure packing: A systematic docking study

по Jiang, Sulin, Tovchigrechko, Andrei, Vakser, Ilya A.
Опубликовано 2003

Dockground protein–protein docking decoy set

по Liu, Shiyong, Gao, Ying, Vakser, Ilya A.
Опубликовано 2008

Docking of protein models

по Tovchigrechko, Andrei, Wells, Christopher A., Vakser, Ilya A.
Опубликовано 2002

GWIDD: Genome-wide protein docking database

по Kundrotas, Petras J., Zhu, Zhengwei, Vakser, Ilya A.
Опубликовано 2010

Protein Docking by the Interface Structure Similarity: How Much Structure Is Needed?

по Sinha, Rohita, Kundrotas, Petras J., Vakser, Ilya A.
Опубликовано 2012

GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions

по Kundrotas, Petras J, Zhu, Zhengwei, Vakser, Ilya A
Опубликовано 2012

Structural templates for modeling homodimers

по Kundrotas, Petras J, Vakser, Ilya A, Janin, Joël
Опубликовано 2013