Statistical methods for identifying yeast cell cycle transcription factors

av Tsai, Huai-Kuang, Lu, Henry Horng-Shing, Li, Wen-Hsiung
Publicerad 2005

Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast

av Tsai, Zing Tsung-Yeh, Shiu, Shin-Han, Tsai, Huai-Kuang
I publikationen PLoS Comput Biol (2015)

Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs

av Liu, Wan-Hsin, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang
I publikationen BMC Genomics (2017)

Co-Expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome

av Tsai, Huai-Kuang, Huang, Pei-Ying, Kao, Cheng-Yan, Wang, Daryi
Publicerad 2009

IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes

av Ng, I-Man, Huang, Jia-Hsin, Tsai, Shang-Chi, Tsai, Huai-Kuang
I publikationen Database (Oxford) (2017)

Associations between intronic non-B DNA structures and exon skipping

av Tsai, Zing Tsung-Yeh, Chu, Wen-Yi, Cheng, Jen-Hao, Tsai, Huai-Kuang
Publicerad 2014

Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast

av Swamy, Krishna BS, Chu, Wen-Yi, Wang, Chun-Yi, Tsai, Huai-Kuang, Wang, Daryi
Publicerad 2011

Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues

av Cheng, Jen-Hao, Pan, David Zhi-Chao, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang
I publikationen Sci Rep (2015)

Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system

av Tsai, Huai-Kuang, Su, Cindy PC, Lu, Mei-Yeh J, Shih, Ching-Hua, Wang, Daryi
Publicerad 2007

Impact of DNA-binding position variants on yeast gene expression

av Swamy, Krishna B. S., Cho, Chung-Yi, Chiang, Sufeng, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang
Publicerad 2009

Setting boundaries for genome-wide heterochromatic DNA deletions through flanking inverted repeats in Tetrahymena thermophila

av Lin, Chih-Yi Gabriela, Chao, Ju-Lan, Tsai, Huai-Kuang, Chalker, Douglas, Yao, Meng-Chao
I publikationen Nucleic Acids Res (2019)

Setting boundaries for genome-wide heterochromatic DNA deletions through flanking inverted repeats in Tetrahymena thermophile

av Lin, Chih-Yi Gabriela, Chao, Ju-Lan, Tsai, Huai-Kuang, Chalker, Douglas, Yao, Meng-Chao
I publikationen Nucleic Acids Res (2019)

The Impact of Trans-Regulation on the Evolutionary Rates of Metazoan Proteins

av Chen, Yi-Ching, Cheng, Jen-Hao, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang, Chuang, Trees-Juen
Publicerad 2013

Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency

av Hsu Ming-Tsung, Su Chien-Hao, Weng Francis C, Wang Tse-Yi, Tsai Huai-Kuang, Wang Daryi
Publicerad 2010-11-01

Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency

av Weng, Francis C, Su, Chien-Hao, Hsu, Ming-Tsung, Wang, Tse-Yi, Tsai, Huai-Kuang, Wang, Daryi
Publicerad 2010

Borders of Cis-Regulatory DNA Sequences Preferentially Harbor the Divergent Transcription Factor Binding Motifs in the Human Genome

av Huang, Jia-Hsin, Kwan, Ryan Shun-Yuen, Tsai, Zing Tsung-Yeh, Lin, Tzu-Chieh, Tsai, Huai-Kuang
I publikationen Front Genet (2018)

GEM: A Gaussian evolutionary method for predicting protein side-chain conformations

av Yang, Jinn-Moon, Tsai, Chi-Hung, Hwang, Ming-Jing, Tsai, Huai-Kuang, Hwang, Jenn-Kang, Kao, Cheng-Yan
Publicerad 2002

Evolutionary conservation of DNA-contact residues in DNA-binding domains

av Chang, Yao-Lin, Tsai, Huai-Kuang, Kao, Cheng-Yan, Chen, Yung-Chian, Hu, Yuh-Jyh, Yang, Jinn-Moon
Publicerad 2008

Evolution of cis-regulatory elements in yeast de novo and duplicated new genes

av Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang, Cheng, Jen-Hao, Lin, Chih-Hsu, Tsai, Yuan-Fan, Wang, Daryi
Publicerad 2012

MYBS: a comprehensive web server for mining transcription factor binding sites in yeast

av Tsai, Huai-Kuang, Chou, Meng-Yuan, Shih, Ching-Hua, Huang, Grace Tzu-Wei, Chang, Tien-Hsien, Li, Wen-Hsiung
Publicerad 2007