A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems

Por Topçuoğlu, Begüm D., Lesniak, Nicholas A., Ruffin, Mack T., Wiens, Jenna, Schloss, Patrick D.
Publicado no mBio (2020)

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth and Interspecies Hydrogen Tr...

Por Topçuoğlu, Begüm D., Meydan, Cem, Nguyen, Tran B., Lang, Susan Q., Holden, James F.
Publicado no Appl Environ Microbiol (2019)

Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure

Por Sze, Marc A., Topçuoğlu, Begüm D., Lesniak, Nicholas A., Ruffin, Mack T., Schloss, Patrick D.
Publicado no mBio (2019)

Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis

Por Hagan, Ada K., Topçuoğlu, Begüm D., Gregory, Mia E., Barton, Hazel A., Schloss, Patrick D.
Publicado no mBio (2020)

Erratum for Hagan et al., “Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis”

Por Hagan, Ada K., Topçuoğlu, Begüm D., Gregory, Mia E., Barton, Hazel A., Schloss, Patrick D.
Publicado no mBio (2021)

Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents

Por Topçuoğlu, Begüm D., Stewart, Lucy C., Morrison, Hilary G., Butterfield, David A., Huber, Julie A., Holden, James F.
Publicado no Front Microbiol (2016)

Long-term forest soil warming alters microbial communities in temperate forest soils

Por DeAngelis, Kristen M., Pold, Grace, Topçuoğlu, Begüm D., van Diepen, Linda T. A., Varney, Rebecca M., Blanchard, Jeffrey L., Melillo, Jerry, Frey, Serita D.
Publicado no Front Microbiol (2015)

Seafloor Incubation Experiment with Deep-Sea Hydrothermal Vent Fluid Reveals Effect of Pressure and Lag Time on Autotrophic Microbial Communities

Por Fortunato, Caroline S., Butterfield, David A., Larson, Benjamin, Lawrence-Slavas, Noah, Algar, Christopher K., Zeigler Allen, Lisa, Holden, James F., Proskurowski, Giora, Reddington, Emily, Stewart, Lucy C., Topçuoğlu, Begüm D., Vallino, Joseph J., Huber, Julie A.
Publicado no Appl Environ Microbiol (2021)

Ten simple rules to increase computational skills among biologists with Code Clubs

Por Hagan, Ada K., Lesniak, Nicholas A., Balunas, Marcy J., Bishop, Lucas, Close, William L., Doherty, Matthew D., Elmore, Amanda G., Flynn, Kaitlin J., Hannigan, Geoffrey D., Koumpouras, Charlie C., Jenior, Matthew L., Kozik, Ariangela J., McBride, Kathryn, Rifkin, Samara B., Stough, Joshua M. A., Sovacool, Kelly L., Sze, Marc A., Tomkovich, Sarah, Topcuoglu, Begum D., Schloss, Patrick D.
Publicado no PLoS Comput Biol (2020)