The bench scientist's guide to statistical analysis of RNA-Seq data

Por Yendrek Craig R, Ainsworth Elizabeth A, Thimmapuram Jyothi
Publicado em 2012-09-01

The bench scientist's guide to statistical analysis of RNA-Seq data

Por Yendrek, Craig R, Ainsworth, Elizabeth A, Thimmapuram, Jyothi
Publicado em 2012

Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome

Por THIMMAPURAM, JYOTHI, DUAN, HUI, LIU, LEI, SCHULER, MARY A.
Publicado em 2005

ViewBS: a powerful toolkit for visualization of high-throughput bisulfite sequencing data

Por Huang, Xiaosan, Zhang, Shaoling, Li, Kongqing, Thimmapuram, Jyothi, Xie, Shaojun
Publicado no Bioinformatics (2018)

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing

Por Kalavacharla, Venu, Liu, Zhanji, Meyers, Blake C, Thimmapuram, Jyothi, Melmaiee, Kalpalatha
Publicado em 2011

Título não disponível

Por Lin, Dawei, Levy, Shawn, Bik, Holly, Wright, Chris L., Thimmapuram, Jyothi
Publicado em 2012

Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq

Por Dworkin, Mollee, Xie, Shaojun, Saha, Malay, Thimmapuram, Jyothi, Kalavacharla, Venu (Kal)
Publicado no BMC Genomics (2017)

Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training

Por Smalheiser, Neil R., Lugli, Giovanni, Thimmapuram, Jyothi, Cook, Edwin H., Larson, John
Publicado em 2011

Mitochondrial Small RNAs that are Up-Regulated in Hippocampus during Olfactory Discrimination Training in Mice

Por Smalheiser, Neil R., Lugli, Giovanni, Thimmapuram, Jyothi, Cook, Edwin H., Larson, John
Publicado em 2011

Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Por Ponniah, Sathish K., Thimmapuram, Jyothi, Bhide, Ketaki, Kalavacharla, Venu (Kal), Manoharan, Muthusamy
Publicado no BMC Plant Biol (2017)

Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.)

Por Horvath, David P, Chao, Wun S, Suttle, Jeffrey C, Thimmapuram, Jyothi, Anderson, James V
Publicado em 2008

Metatranscriptomic profiles of Eastern subterranean termites, Reticulitermes flavipes (Kollar) fed on second generation feedstocks

Por Rajarapu, Swapna Priya, Shreve, Jacob T, Bhide, Ketaki P, Thimmapuram, Jyothi, Scharf, Michael E
Publicado no BMC Genomics (2015)

A Study of Alterations in DNA Epigenetic Modifications (5mC and 5hmC) and Gene Expression Influenced by Simulated Microgravity in Human Lymphoblastoid Cells

Por Chowdhury, Basudev, Seetharam, Arun, Wang, Zhiping, Liu, Yunlong, Lossie, Amy C., Thimmapuram, Jyothi, Irudayaraj, Joseph
Publicado no PLoS One (2016)

The impact of orally administered phages on host immune response and surrounding microbial communities

Por Hong, Yingying, Thimmapuram, Jyothi, Zhang, Jiayi, Collings, Clayton K., Bhide, Ketaki, Schmidt, Kyle, Ebner, Paul D.
Publicado no Bacteriophage (2016)

Título não disponível

Por Gao, Yuan, Grills, George, Lin, Dawei, Levy, Shawn, Thimmapuram, Jyothi, Smith, Todd, Pillardy, Jaroslaw, Mason, Christopher E., Jafari, Nadereh
Publicado em 2013

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

Por Tamaki, Hideyuki, Wright, Chris L., Li, Xiangzhen, Lin, Qiaoyan, Hwang, Chiachi, Wang, Shiping, Thimmapuram, Jyothi, Kamagata, Yoichi, Liu, Wen-Tso
Publicado em 2011

Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns

Por Malik, Assaf, Korol, Abraham, Hübner, Sariel, Hernandez, Alvaro G., Thimmapuram, Jyothi, Ali, Shahjahan, Glaser, Fabian, Paz, Arnon, Avivi, Aaron, Band, Mark
Publicado em 2011

Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass

Por Ayyappan, Vasudevan, Saha, Malay C., Thimmapuram, Jyothi, Sripathi, Venkateswara R., Bhide, Ketaki P., Fiedler, Elizabeth, Hayford, Rita K., Kalavacharla, Venu (Kal)
Publicado no Plant Cell Rep (2016)

CYCLIN-DEPENDENT KINASE8 Differentially Regulates Plant Immunity to Fungal Pathogens through Kinase-Dependent and -Independent Functions in Arabidopsis

Por Zhu, Yingfang, Schluttenhoffer, Craig M., Wang, Pengcheng, Fu, Fuyou, Thimmapuram, Jyothi, Zhu, Jian-Kang, Lee, Sang Yeol, Yun, Dae-Jin, Mengiste, Tesfaye
Publicado no Plant Cell (2014)

Genome-Wide Profiling of Histone Modifications (H3K9(me2) and H4K12(ac)) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.)

Por Ayyappan, Vasudevan, Kalavacharla, Venu, Thimmapuram, Jyothi, Bhide, Ketaki P., Sripathi, Venkateswara R., Smolinski, Tomasz G., Manoharan, Muthusamy, Thurston, Yaqoob, Todd, Antonette, Kingham, Bruce
Publicado no PLoS One (2015)