An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

Por Taylor, Ronald C
Publicado em 2010

Identification of Putative Programmed −1 Ribosomal Frameshift Signals in Large DNA Databases

Por Hammell, Amy B., Taylor, Ronald C., Peltz, Stuart W., Dinman, Jonathan D.
Publicado em 1999

Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress

Por Taylor, Ronald C., Acquaah-Mensah, George, Singhal, Mudita, Malhotra, Deepti, Biswal, Shyam
Publicado em 2008

Modeling framework for isotopic labeling of heteronuclear moieties

Por Borkum, Mark I., Reardon, Patrick N., Taylor, Ronald C., Isern, Nancy G.
Publicado no J Cheminform (2017)

The Highly Conserved MraZ Protein Is a Transcriptional Regulator in Escherichia coli

Por Eraso, Jesus M., Markillie, Lye M., Mitchell, Hugh D., Taylor, Ronald C., Orr, Galya, Margolin, William
Publicado em 2014

The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure

Por Dinman, Jonathan D., Richter, Sara, Plant, Ewan P., Taylor, Ronald C., Hammell, Amy B., Rana, Tariq M.
Publicado em 2002

Microbial Community Metabolic Modeling: A Community Data‐Driven Network Reconstruction

Por Henry, Christopher S., Bernstein, Hans C., Weisenhorn, Pamela, Taylor, Ronald C., Lee, Joon‐Yong, Zucker, Jeremy, Song, Hyun‐Seob
Publicado no J Cell Physiol (2016)

Gene set analyses for interpreting microarray experiments on prokaryotic organisms

Por Tintle, Nathan L, Best, Aaron A, DeJongh, Matthew, Van Bruggen, Dirk, Heffron, Fred, Porwollik, Steffen, Taylor, Ronald C
Publicado em 2008

Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics

Por Hess, Becky M., Xue, Junfeng, Markillie, Lye Meng, Taylor, Ronald C., Wiley, H. Steven, Ahring, Birgitte K., Linggi, Bryan
Publicado em 2013

Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage

Por Croken, Matthew McKnight, Ma, Yanfen, Markillie, Lye Meng, Taylor, Ronald C., Orr, Galya, Weiss, Louis M., Kim, Kami
Publicado no PLoS One (2014)

The Toxoplasma gondii Cyst Wall Protein CST1 Is Critical for Cyst Wall Integrity and Promotes Bradyzoite Persistence

Por Tomita, Tadakimi, Bzik, David J., Ma, Yan Fen, Fox, Barbara A., Markillie, Lye Meng, Taylor, Ronald C., Kim, Kami, Weiss, Louis M.
Publicado em 2013

Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data

Por Faria, José P., Overbeek, Ross, Taylor, Ronald C., Conrad, Neal, Vonstein, Veronika, Goelzer, Anne, Fromion, Vincent, Rocha, Miguel, Rocha, Isabel, Henry, Christopher S.
Publicado no Front Microbiol (2016)

Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1

Por DeAngelis, Kristen M., Sharma, Deepak, Varney, Rebecca, Simmons, Blake, Isern, Nancy G., Markilllie, Lye Meng, Nicora, Carrie, Norbeck, Angela D., Taylor, Ronald C., Aldrich, Joshua T., Robinson, Errol W.
Publicado em 2013

Changes in Translational Efficiency is a Dominant Regulatory Mechanism in the Environmental Response of Bacteria()

Por Taylor, Ronald C., Webb Robertson, Bobbie-Jo M., Markille, Lye Meng, Serres, Margrethe H., Linggi, Bryan E., Aldrich, Joshua T., Hill, Eric A., Romine, Margaret F., Lipton, Mary S., Wiley, Steven
Publicado em 2013

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002

Por McClure, Ryan S., Overall, Christopher C., McDermott, Jason E., Hill, Eric A., Markillie, Lye Meng, McCue, Lee Ann, Taylor, Ronald C., Ludwig, Marcus, Bryant, Donald A., Beliaev, Alexander S.
Publicado no Nucleic Acids Res (2016)

Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg(2+)/pH Medium

Por Shi, Liang, Ansong, Charles, Smallwood, Heather, Rommereim, Leah, McDermott, Jason E., Brewer, Heather M., Norbeck, Angela D., Taylor, Ronald C., Gustin, Jean K., Heffron, Fred, Smith, Richard D., Adkins, Joshua N.
Publicado em 2009

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach

Por Lindemann, Stephen R., Mobberley, Jennifer M., Cole, Jessica K., Markillie, L. M., Taylor, Ronald C., Huang, Eric, Chrisler, William B., Wiley, H. S., Lipton, Mary S., Nelson, William C., Fredrickson, James K., Romine, Margaret F.
Publicado no Front Microbiol (2017)

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

Por Faria, José P., Davis, James J., Edirisinghe, Janaka N., Taylor, Ronald C., Weisenhorn, Pamela, Olson, Robert D., Stevens, Rick L., Rocha, Miguel, Rocha, Isabel, Best, Aaron A., DeJongh, Matthew, Tintle, Nathan L., Parrello, Bruce, Overbeek, Ross, Henry, Christopher S.
Publicado no Front Microbiol (2016)

Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)

Por Deutsch, Eric W, Ball, Catherine A, Berman, Jules J, Bova, G Steven, Brazma, Alvis, Bumgarner, Roger E, Campbell, David, Causton, Helen C, Christiansen, Jeffrey H, Daian, Fabrice, Dauga, Delphine, Davidson, Duncan R, Gimenez, Gregory, Goo, Young Ah, Grimmond, Sean, Henrich, Thorsten, Herrmann, Bernhard G, Johnson, Michael H, Korb, Martin, Mills, Jason C, Oudes, Asa J, Parkinson, Helen E, Pascal, Laura E, Pollet, Nicolas, Quackenbush, John, Ramialison, Mirana, Ringwald, Martin, Salgado, David, Sansone, Susanna-Assunta, Sherlock, Gavin, Stoeckert, Christian J, Swedlow, Jason, Taylor, Ronald C, Walashek, Laura, Warford, Anthony, Wilkinson, David G, Zhou, Yi, Zon, Leonard I, Liu, Alvin Y, True, Lawrence D
Publicado no Nat Biotechnol (2008)