Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

di Nueda, María José, Tarazona, Sonia, Conesa, Ana
Pubblicazione 2014

RGmatch: matching genomic regions to proximal genes in omics data integration

di Furió-Tarí, Pedro, Conesa, Ana, Tarazona, Sonia
Pubblicato in BMC Bioinformatics (2016)

Differential expression in RNA-seq: A matter of depth

di Tarazona, Sonia, García-Alcalde, Fernando, Dopazo, Joaquín, Ferrer, Alberto, Conesa, Ana
Pubblicazione 2011

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

di Furió-Tarí, Pedro, Tarazona, Sonia, Gabaldón, Toni, Enright, Anton J., Conesa, Ana
Pubblicato in Nucleic Acids Res (2016)

Identification and visualization of differential isoform expression in RNA-seq time series

di Nueda, María José, Martorell-Marugan, Jordi, Martí, Cristina, Tarazona, Sonia, Conesa, Ana
Pubblicato in Bioinformatics (2018)

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis

di Delaye, Luis, Ruiz-Ruiz, Susana, Calderon, Enrique, Tarazona, Sonia, Conesa, Ana, Moya, Andrés
Pubblicato in Genome Biol Evol (2018)

Functional assessment of time course microarray data

di Nueda, María José, Sebastián, Patricia, Tarazona, Sonia, García-García, Francisco, Dopazo, Joaquín, Ferrer, Alberto, Conesa, Ana
Pubblicazione 2009

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach

di Sánchez-Gaya, Víctor, Casaní-Galdón, Salvador, Ugidos, Manuel, Kuang, Zheng, Mellor, Jane, Conesa, Ana, Tarazona, Sonia
Pubblicato in Front Genet (2018)

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

di Irmer, Henriette, Tarazona, Sonia, Sasse, Christoph, Olbermann, Patrick, Loeffler, Jürgen, Krappmann, Sven, Conesa, Ana, Braus, Gerhard H.
Pubblicato in BMC Genomics (2015)

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

di Tarazona, Sonia, Furió-Tarí, Pedro, Turrà, David, Pietro, Antonio Di, Nueda, María José, Ferrer, Alberto, Conesa, Ana
Pubblicato in Nucleic Acids Res (2015)

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

di Nuño-Cabanes, Carme, Ugidos, Manuel, Tarazona, Sonia, Martín-Expósito, Manuel, Ferrer, Alberto, Rodríguez-Navarro, Susana, Conesa, Ana
Pubblicato in Sci Data (2020)

Pathway network inference from gene expression data

di Ponzoni, Ignacio, Nueda, María José, Tarazona, Sonia, Götz, Stefan, Montaner, David, Dussaut, Julieta Sol, Dopazo, Joaquín, Conesa, Ana
Pubblicazione 2014

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

di Rubio, Teresa, Felipo, Vicente, Tarazona, Sonia, Pastorelli, Roberta, Escudero-García, Desamparados, Tosca, Joan, Urios, Amparo, Conesa, Ana, Montoliu, Carmina
Pubblicato in Sci Rep (2021)

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data

di Hernández-de-Diego, Rafael, Tarazona, Sonia, Martínez-Mira, Carlos, Balzano-Nogueira, Leandro, Furió-Tarí, Pedro, Pappas, Georgios J, Conesa, Ana
Pubblicato in Nucleic Acids Res (2018)

Harmonization of quality metrics and power calculation in multi-omic studies

di Tarazona, Sonia, Balzano-Nogueira, Leandro, Gómez-Cabrero, David, Schmidt, Andreas, Imhof, Axel, Hankemeier, Thomas, Tegnér, Jesper, Westerhuis, Johan A., Conesa, Ana
Pubblicato in Nat Commun (2020)

Understanding disease mechanisms with models of signaling pathway activities

di Sebastian-Leon, Patricia, Vidal, Enrique, Minguez, Pablo, Conesa, Ana, Tarazona, Sonia, Amadoz, Alicia, Armero, Carmen, Salavert, Francisco, Vidal-Puig, Antonio, Montaner, David, Dopazo, Joaquín
Pubblicazione 2014

A survey of best practices for RNA-seq data analysis

di Conesa, Ana, Madrigal, Pedro, Tarazona, Sonia, Gomez-Cabrero, David, Cervera, Alejandra, McPherson, Andrew, Szcześniak, Michał Wojciech, Gaffney, Daniel J., Elo, Laura L., Zhang, Xuegong, Mortazavi, Ali
Pubblicato in Genome Biol (2016)

Erratum to: A survey of best practices for RNA-seq data analysis

di Conesa, Ana, Madrigal, Pedro, Tarazona, Sonia, Gomez-Cabrero, David, Cervera, Alejandra, McPherson, Andrew, Szcześniak, Michal Wojciech, Gaffney, Daniel J., Elo, Laura L., Zhang, Xuegong, Mortazavi, Ali
Pubblicato in Genome Biol (2016)

STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline

di Planell, Nuria, Lagani, Vincenzo, Sebastian-Leon, Patricia, van der Kloet, Frans, Ewing, Ewoud, Karathanasis, Nestoras, Urdangarin, Arantxa, Arozarena, Imanol, Jagodic, Maja, Tsamardinos, Ioannis, Tarazona, Sonia, Conesa, Ana, Tegner, Jesper, Gomez-Cabrero, David
Pubblicato in Front Genet (2021)

Mutant PRPF8 Causes Widespread Splicing Changes in Spliceosome Components in Retinitis Pigmentosa Patient iPSC-Derived RPE Cells

di Arzalluz-Luque, Ángeles, Cabrera, Jose Luis, Skottman, Heli, Benguria, Alberto, Bolinches-Amorós, Arantxa, Cuenca, Nicolás, Lupo, Vincenzo, Dopazo, Ana, Tarazona, Sonia, Delás, Bárbara, Carballo, Miguel, Pascual, Beatriz, Hernan, Imma, Erceg, Slaven, Lukovic, Dunja
Pubblicato in Front Neurosci (2021)