Visualization of consensus genome structure without using a reference genome

door Tada, Ipputa, Tanizawa, Yasuhiro, Arita, Masanori
Gepubliceerd in BMC Genomics (2017)

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

door Tanizawa, Yasuhiro, Fujisawa, Takatomo, Nakamura, Yasukazu
Gepubliceerd in Bioinformatics (2018)

Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage

door Tanizawa, Yasuhiro, Tohno, Masanori, Kaminuma, Eli, Nakamura, Yasukazu, Arita, Masanori
Gepubliceerd in BMC Genomics (2015)

DFAST and DAGA: web-based integrated genome annotation tools and resources

door TANIZAWA, Yasuhiro, FUJISAWA, Takatomo, KAMINUMA, Eli, NAKAMURA, Yasukazu, ARITA, Masanori
Gepubliceerd in Biosci Microbiota Food Health (2016)

Revealing the genomic differences between two subgroups in Lactobacillus gasseri

door TADA, Ipputa, TANIZAWA, Yasuhiro, ENDO, Akihito, TOHNO, Masanori, ARITA, Masanori
Gepubliceerd in Biosci Microbiota Food Health (2017)

Draft Genome Sequence of Lactobacillus oryzae Strain SG293(T)

door Tanizawa, Yasuhiro, Fujisawa, Takatomo, Mochizuki, Takako, Kaminuma, Eli, Nakamura, Yasukazu, Tohno, Masanori
Gepubliceerd in 2014

Unique niche-specific adaptation of fructophilic lactic acid bacteria and proposal of three Apilactobacillus species as novel members of the group

door Maeno, Shintaro, Nishimura, Hiroya, Tanizawa, Yasuhiro, Dicks, Leon, Arita, Masanori, Endo, Akihito
Gepubliceerd in BMC Microbiol (2021)

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci

door Kaminuma, Eli, Fujisawa, Takatomo, Tanizawa, Yasuhiro, Sakamoto, Naoko, Kurata, Nori, Shimizu, Tokurou, Nakamura, Yasukazu
Gepubliceerd in 2013

Draft Genome Sequence of Weissella oryzae SG25(T), Isolated from Fermented Rice Grains

door Tanizawa, Yasuhiro, Fujisawa, Takatomo, Mochizuki, Takako, Kaminuma, Eli, Suzuki, Yutaka, Nakamura, Yasukazu, Tohno, Masanori
Gepubliceerd in 2014

Fructophilic Lactic Acid Bacteria, a Unique Group of Fructose-Fermenting Microbes

door Endo, Akihito, Maeno, Shintaro, Tanizawa, Yasuhiro, Kneifel, Wolfgang, Arita, Masanori, Dicks, Leon, Salminen, Seppo
Gepubliceerd in Appl Environ Microbiol (2018)

Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri

door TANIZAWA, Yasuhiro, KOBAYASHI, Hisami, KAMINUMA, Eli, SAKAMOTO, Mitsuo, OHKUMA, Moriya, NAKAMURA, Yasukazu, ARITA, Masanori, TOHNO, Masanori
Gepubliceerd in Biosci Microbiota Food Health (2017)

Pseudofructophilic Leuconostoc citreum Strain F192-5, Isolated from Satsuma Mandarin Peel

door Maeno, Shintaro, Tanizawa, Yasuhiro, Kajikawa, Akinobu, Kanesaki, Yu, Kubota, Eri, Arita, Masanori, Dicks, Leon, Endo, Akihito
Gepubliceerd in Appl Environ Microbiol (2019)

Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs

door Udagawa, Chihiro, Sasaki, Yasushi, Tanizawa, Yasuhiro, Suemizu, Hiroshi, Ohnishi, Yasuyuki, Nakamura, Yasukazu, Tokino, Takashi, Zembutsu, Hitoshi
Gepubliceerd in PLoS One (2020)

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach

door Shimizu, Tokurou, Tanizawa, Yasuhiro, Mochizuki, Takako, Nagasaki, Hideki, Yoshioka, Terutaka, Toyoda, Atsushi, Fujiyama, Asao, Kaminuma, Eli, Nakamura, Yasukazu
Gepubliceerd in Front Genet (2017)

Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.

door Endo, Akihito, Tanizawa, Yasuhiro, Tanaka, Naoto, Maeno, Shintaro, Kumar, Himanshu, Shiwa, Yuh, Okada, Sanae, Yoshikawa, Hirofumi, Dicks, Leon, Nakagawa, Junichi, Arita, Masanori
Gepubliceerd in BMC Genomics (2015)

DNApod: DNA polymorphism annotation database from next-generation sequence read archives

door Mochizuki, Takako, Tanizawa, Yasuhiro, Fujisawa, Takatomo, Ohta, Tazro, Nikoh, Naruo, Shimizu, Tokurou, Toyoda, Atsushi, Fujiyama, Asao, Kurata, Nori, Nagasaki, Hideki, Kaminuma, Eli, Nakamura, Yasukazu
Gepubliceerd in PLoS One (2017)

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

door Kajiya-Kanegae, Hiromi, Ohyanagi, Hajime, Ebata, Toshinobu, Tanizawa, Yasuhiro, Onogi, Akio, Sawada, Yuji, Hirai, Masami Yokota, Wang, Zi-Xuan, Han, Bin, Toyoda, Atsushi, Fujiyama, Asao, Iwata, Hiroyoshi, Tsuda, Katsutoshi, Suzuki, Toshiya, Nosaka-Takahashi, Misuzu, Nonomura, Ken-ichi, Nakamura, Yasukazu, Kawamoto, Shoko, Kurata, Nori, Sato, Yutaka
Gepubliceerd in Rice (N Y) (2021)

Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestin...

door Arimizu, Yoko, Kirino, Yumi, Sato, Mitsuhiko P., Uno, Koichi, Sato, Toshio, Gotoh, Yasuhiro, Auvray, Frédéric, Brugere, Hubert, Oswald, Eric, Mainil, Jacques G., Anklam, Kelly S., Döpfer, Dörte, Yoshino, Shuji, Ooka, Tadasuke, Tanizawa, Yasuhiro, Nakamura, Yasukazu, Iguchi, Atsushi, Morita-Ishihara, Tomoko, Ohnishi, Makoto, Akashi, Koichi, Hayashi, Tetsuya, Ogura, Yoshitoshi
Gepubliceerd in Genome Res (2019)

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

door Montgomery, Sean A., Tanizawa, Yasuhiro, Galik, Bence, Wang, Nan, Ito, Tasuku, Mochizuki, Takako, Akimcheva, Svetlana, Bowman, John L., Cognat, Valérie, Maréchal-Drouard, Laurence, Ekker, Heinz, Hong, Syuan-Fei, Kohchi, Takayuki, Lin, Shih-Shun, Daisy Liu, Li-Yu, Nakamura, Yasukazu, Valeeva, Lia R., Shakirov, Eugene V., Shippen, Dorothy E., Wei, Wei-Lun, Yagura, Masaru, Yamaoka, Shohei, Yamato, Katsuyuki T., Liu, Chang, Berger, Frédéric
Gepubliceerd in Curr Biol (2020)