Visualization of consensus genome structure without using a reference genome

Autor Tada, Ipputa, Tanizawa, Yasuhiro, Arita, Masanori
Vydáno v BMC Genomics (2017)

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

Autor Tanizawa, Yasuhiro, Fujisawa, Takatomo, Nakamura, Yasukazu
Vydáno v Bioinformatics (2018)

Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage

Autor Tanizawa, Yasuhiro, Tohno, Masanori, Kaminuma, Eli, Nakamura, Yasukazu, Arita, Masanori
Vydáno v BMC Genomics (2015)

DFAST and DAGA: web-based integrated genome annotation tools and resources

Autor TANIZAWA, Yasuhiro, FUJISAWA, Takatomo, KAMINUMA, Eli, NAKAMURA, Yasukazu, ARITA, Masanori
Vydáno v Biosci Microbiota Food Health (2016)

Revealing the genomic differences between two subgroups in Lactobacillus gasseri

Autor TADA, Ipputa, TANIZAWA, Yasuhiro, ENDO, Akihito, TOHNO, Masanori, ARITA, Masanori
Vydáno v Biosci Microbiota Food Health (2017)

Draft Genome Sequence of Lactobacillus oryzae Strain SG293(T)

Autor Tanizawa, Yasuhiro, Fujisawa, Takatomo, Mochizuki, Takako, Kaminuma, Eli, Nakamura, Yasukazu, Tohno, Masanori
Vydáno 2014

Unique niche-specific adaptation of fructophilic lactic acid bacteria and proposal of three Apilactobacillus species as novel members of the group

Autor Maeno, Shintaro, Nishimura, Hiroya, Tanizawa, Yasuhiro, Dicks, Leon, Arita, Masanori, Endo, Akihito
Vydáno v BMC Microbiol (2021)

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci

Autor Kaminuma, Eli, Fujisawa, Takatomo, Tanizawa, Yasuhiro, Sakamoto, Naoko, Kurata, Nori, Shimizu, Tokurou, Nakamura, Yasukazu
Vydáno 2013

Draft Genome Sequence of Weissella oryzae SG25(T), Isolated from Fermented Rice Grains

Autor Tanizawa, Yasuhiro, Fujisawa, Takatomo, Mochizuki, Takako, Kaminuma, Eli, Suzuki, Yutaka, Nakamura, Yasukazu, Tohno, Masanori
Vydáno 2014

Fructophilic Lactic Acid Bacteria, a Unique Group of Fructose-Fermenting Microbes

Autor Endo, Akihito, Maeno, Shintaro, Tanizawa, Yasuhiro, Kneifel, Wolfgang, Arita, Masanori, Dicks, Leon, Salminen, Seppo
Vydáno v Appl Environ Microbiol (2018)

Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri

Autor TANIZAWA, Yasuhiro, KOBAYASHI, Hisami, KAMINUMA, Eli, SAKAMOTO, Mitsuo, OHKUMA, Moriya, NAKAMURA, Yasukazu, ARITA, Masanori, TOHNO, Masanori
Vydáno v Biosci Microbiota Food Health (2017)

Pseudofructophilic Leuconostoc citreum Strain F192-5, Isolated from Satsuma Mandarin Peel

Autor Maeno, Shintaro, Tanizawa, Yasuhiro, Kajikawa, Akinobu, Kanesaki, Yu, Kubota, Eri, Arita, Masanori, Dicks, Leon, Endo, Akihito
Vydáno v Appl Environ Microbiol (2019)

Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs

Autor Udagawa, Chihiro, Sasaki, Yasushi, Tanizawa, Yasuhiro, Suemizu, Hiroshi, Ohnishi, Yasuyuki, Nakamura, Yasukazu, Tokino, Takashi, Zembutsu, Hitoshi
Vydáno v PLoS One (2020)

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach

Autor Shimizu, Tokurou, Tanizawa, Yasuhiro, Mochizuki, Takako, Nagasaki, Hideki, Yoshioka, Terutaka, Toyoda, Atsushi, Fujiyama, Asao, Kaminuma, Eli, Nakamura, Yasukazu
Vydáno v Front Genet (2017)

Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.

Autor Endo, Akihito, Tanizawa, Yasuhiro, Tanaka, Naoto, Maeno, Shintaro, Kumar, Himanshu, Shiwa, Yuh, Okada, Sanae, Yoshikawa, Hirofumi, Dicks, Leon, Nakagawa, Junichi, Arita, Masanori
Vydáno v BMC Genomics (2015)

DNApod: DNA polymorphism annotation database from next-generation sequence read archives

Autor Mochizuki, Takako, Tanizawa, Yasuhiro, Fujisawa, Takatomo, Ohta, Tazro, Nikoh, Naruo, Shimizu, Tokurou, Toyoda, Atsushi, Fujiyama, Asao, Kurata, Nori, Nagasaki, Hideki, Kaminuma, Eli, Nakamura, Yasukazu
Vydáno v PLoS One (2017)

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

Autor Kajiya-Kanegae, Hiromi, Ohyanagi, Hajime, Ebata, Toshinobu, Tanizawa, Yasuhiro, Onogi, Akio, Sawada, Yuji, Hirai, Masami Yokota, Wang, Zi-Xuan, Han, Bin, Toyoda, Atsushi, Fujiyama, Asao, Iwata, Hiroyoshi, Tsuda, Katsutoshi, Suzuki, Toshiya, Nosaka-Takahashi, Misuzu, Nonomura, Ken-ichi, Nakamura, Yasukazu, Kawamoto, Shoko, Kurata, Nori, Sato, Yutaka
Vydáno v Rice (N Y) (2021)

Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestin...

Autor Arimizu, Yoko, Kirino, Yumi, Sato, Mitsuhiko P., Uno, Koichi, Sato, Toshio, Gotoh, Yasuhiro, Auvray, Frédéric, Brugere, Hubert, Oswald, Eric, Mainil, Jacques G., Anklam, Kelly S., Döpfer, Dörte, Yoshino, Shuji, Ooka, Tadasuke, Tanizawa, Yasuhiro, Nakamura, Yasukazu, Iguchi, Atsushi, Morita-Ishihara, Tomoko, Ohnishi, Makoto, Akashi, Koichi, Hayashi, Tetsuya, Ogura, Yoshitoshi
Vydáno v Genome Res (2019)

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

Autor Montgomery, Sean A., Tanizawa, Yasuhiro, Galik, Bence, Wang, Nan, Ito, Tasuku, Mochizuki, Takako, Akimcheva, Svetlana, Bowman, John L., Cognat, Valérie, Maréchal-Drouard, Laurence, Ekker, Heinz, Hong, Syuan-Fei, Kohchi, Takayuki, Lin, Shih-Shun, Daisy Liu, Li-Yu, Nakamura, Yasukazu, Valeeva, Lia R., Shakirov, Eugene V., Shippen, Dorothy E., Wei, Wei-Lun, Yagura, Masaru, Yamaoka, Shohei, Yamato, Katsuyuki T., Liu, Chang, Berger, Frédéric
Vydáno v Curr Biol (2020)