Calculating site-specific evolutionary rates at the amino-acid or codon level yields similar rate estimates

Por Sydykova, Dariya K., Wilke, Claus O.
Publicado no PeerJ (2017)

PeptideBuilder: A simple Python library to generate model peptides

Por Tien, Matthew Z., Sydykova, Dariya K., Meyer, Austin G., Wilke, Claus O.
Publicado em 2013

Measuring evolutionary rates of proteins in a structural context

Por Sydykova, Dariya K., Jack, Benjamin R., Spielman, Stephanie J., Wilke, Claus O.
Publicado no F1000Res (2018)

Maximum Allowed Solvent Accessibilites of Residues in Proteins

Por Tien, Matthew Z., Meyer, Austin G., Sydykova, Dariya K., Spielman, Stephanie J., Wilke, Claus O.
Publicado em 2013

Predicting Evolutionary Site Variability from Structure in Viral Proteins: Buriedness, Packing, Flexibility, and Design

Por Shahmoradi, Amir, Sydykova, Dariya K., Spielman, Stephanie J., Jackson, Eleisha L., Dawson, Eric T., Meyer, Austin G., Wilke, Claus O.
Publicado em 2014

Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation

Por Houser, John R., Barnhart, Craig, Boutz, Daniel R., Carroll, Sean M., Dasgupta, Aurko, Michener, Joshua K., Needham, Brittany D., Papoulas, Ophelia, Sridhara, Viswanadham, Sydykova, Dariya K., Marx, Christopher J., Trent, M. Stephen, Barrick, Jeffrey E., Marcotte, Edward M., Wilke, Claus O.
Publicado no PLoS Comput Biol (2015)

The E. coli molecular phenotype under different growth conditions

Por Caglar, Mehmet U., Houser, John R., Barnhart, Craig S., Boutz, Daniel R., Carroll, Sean M., Dasgupta, Aurko, Lenoir, Walter F., Smith, Bartram L., Sridhara, Viswanadham, Sydykova, Dariya K., Vander Wood, Drew, Marx, Christopher J., Marcotte, Edward M., Barrick, Jeffrey E., Wilke, Claus O.
Publicado no Sci Rep (2017)