Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

অনুযায়ী Griffith, Malachi, Walker, Jason R., Spies, Nicholas C., Ainscough, Benjamin J., Griffith, Obi L.
প্রকাশিত PLoS Comput Biol (2015)

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database

অনুযায়ী Cotto, Kelsy C, Wagner, Alex H, Feng, Yang-Yang, Kiwala, Susanna, Coffman, Adam C, Spies, Gregory, Wollam, Alex, Spies, Nicholas C, Griffith, Obi L, Griffith, Malachi
প্রকাশিত Nucleic Acids Res (2018)

DGIdb 2.0: mining clinically relevant drug–gene interactions

অনুযায়ী Wagner, Alex H., Coffman, Adam C., Ainscough, Benjamin J., Spies, Nicholas C., Skidmore, Zachary L., Campbell, Katie M., Krysiak, Kilannin, Pan, Deng, McMichael, Joshua F., Eldred, James M., Walker, Jason R., Wilson, Richard K., Mardis, Elaine R., Griffith, Malachi, Griffith, Obi L.
প্রকাশিত Nucleic Acids Res (2016)

A phase 1 trial of BKM120 (Buparlisib) in combination with fulvestrant in postmenopausal women with estrogen receptor positive metastatic breast cancer

অনুযায়ী Ma, Cynthia X., Luo, Jingqin, Naughton, Michael, Ademuyiwa, Foluso, Suresh, Rama, Griffith, Malachi, Griffith, Obi L., Skidmore, Zachary L., Spies, Nicholas C., Ramu, Avinash, Trani, Lee, Pluard, Timothy, Nagaraj, Gayathri, Thomas, Shana, Guo, Zhanfang, Hoog, Jeremy, Han, Jing, Mardis, Elaine, Lockhart, Craig, Ellis, Matthew J.
প্রকাশিত Clin Cancer Res (2015)

Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes

অনুযায়ী Barnell, Erica K., Waalkes, Adam, Mosior, Matt C., Penewit, Kelsi, Cotto, Kelsy C., Danos, Arpad M., Sheta, Lana M., Campbell, Katie M., Krysiak, Kilannin, Rieke, Damian, Spies, Nicholas C., Skidmore, Zachary L., Pritchard, Colin C., Fehniger, Todd A., Uppaluri, Ravindra, Govindan, Ramaswamy, Griffith, Malachi, Salipante, Stephen J., Griffith, Obi L.
প্রকাশিত JCO Clin Cancer Inform (2019)

DGIdb - Mining the druggable genome

অনুযায়ী Griffith, Malachi, Griffith, Obi L., Coffman, Adam C., Weible, James V., McMichael, Josh F., Spies, Nicholas C., Koval, James, Das, Indraniel, Callaway, Matthew B., Eldred, James M., Miller, Christopher A., Subramanian, Janakiraman, Govindan, Ramaswamy, Kumar, Runjun D., Bose, Ron, Ding, Li, Walker, Jason R., Larson, David E., Dooling, David J., Smith, Scott M., Ley, Timothy J., Mardis, Elaine R., Wilson, Richard K.
প্রকাশিত 2013

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

অনুযায়ী Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Krysiak, Kilannin, Ainscough, Benjamin J., Sheta, Lana M., Pema, Shahil P., Schmidt, Alina D., Richters, Megan, Cotto, Kelsy C., Danos, Arpad M., Ramirez, Cody, Skidmore, Zachary L., Spies, Nicholas C., Hundal, Jasreet, Sediqzad, Malik S., Kunisaki, Jason, Gomez, Felicia, Trani, Lee, Matlock, Matthew, Wagner, Alex H., Swamidass, S. Joshua, Griffith, Malachi, Griffith, Obi L.
প্রকাশিত Genet Med (2018)

Standard operating procedure for curation and clinical interpretation of variants in cancer

অনুযায়ী Danos, Arpad M., Krysiak, Kilannin, Barnell, Erica K., Coffman, Adam C., McMichael, Joshua F., Kiwala, Susanna, Spies, Nicholas C., Sheta, Lana M., Pema, Shahil P., Kujan, Lynzey, Clark, Kaitlin A., Wollam, Amber Z., Rao, Shruti, Ritter, Deborah I., Sonkin, Dmitriy, Raca, Gordana, Lin, Wan-Hsin, Grisdale, Cameron J., Kim, Raymond H., Wagner, Alex H., Madhavan, Subha, Griffith, Malachi, Griffith, Obi L.
প্রকাশিত Genome Med (2019)

NeoPalAna: Neoadjuvant palbociclib, a cyclin-dependent kinase 4/6 inhibitor, and anastrozole for clinical stage 2 or 3 estrogen receptor positive breast cancer

অনুযায়ী Ma, Cynthia X., Gao, Feng, Luo, Jingqin, Northfelt, Donald W., Goetz, Matthew, Forero, Andres, Hoog, Jeremy, Naughton, Michael, Ademuyiwa, Foluso, Suresh, Rama, Anderson, Karen S., Margenthaler, Julie, Aft, Rebecca, Hobday, Timothy, Moynihan, Timothy, Gillanders, William, Cyr, Amy, Eberlein, Timothy J., Hieken, Tina, Krontiras, Helen, Guo, Zhanfang, Lee, Michelle V., Spies, Nicholas C., Skidmore, Zachary L., Griffith, Obi L., Griffith, Malachi, Thomas, Shana, Bumb, Caroline, Vij, Kiran, Bartlett, Cynthia Huang, Koehler, Maria, Al-Kateb, Hussam, Sanati, Souzan, Ellis, Matthew J.
প্রকাশিত Clin Cancer Res (2017)

The prognostic effects of somatic mutations in ER-positive breast cancer

অনুযায়ী Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.
প্রকাশিত Nat Commun (2018)

Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer

অনুযায়ী Wagner, Alex H., Devarakonda, Siddhartha, Skidmore, Zachary L., Krysiak, Kilannin, Ramu, Avinash, Trani, Lee, Kunisaki, Jason, Masood, Ashiq, Waqar, Saiama N., Spies, Nicholas C., Morgensztern, Daniel, Waligorski, Jason, Ponce, Jennifer, Fulton, Robert S., Maggi, Leonard B., Weber, Jason D., Watson, Mark A., O’Conor, Christopher J., Ritter, Jon H., Olsen, Rachelle R., Cheng, Haixia, Mukhopadhyay, Anandaroop, Can, Ismail, Cessna, Melissa H., Oliver, Trudy G., Mardis, Elaine R., Wilson, Richard K., Griffith, Malachi, Griffith, Obi L., Govindan, Ramaswamy
প্রকাশিত Nat Commun (2018)

Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer

অনুযায়ী Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.
প্রকাশিত Nat Commun (2018)

Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B lymphoblastic leukemia

অনুযায়ী Griffith, Malachi, Griffith, Obi L., Krysiak, Kilannin, Skidmore, Zachary L., Christopher, Matthew J., Klco, Jeffery M., Ramu, Avinash, Lamprecht, Tamara L., Wagner, Alex H., Campbell, Katie M., Lesurf, Robert, Hundal, Jasreet, Zhang, Jin, Spies, Nicholas C., Ainscough, Benjamin J., Larson, David E., Heath, Sharon E., Fronick, Catrina, O'Laughlin, Shelly, Fulton, Robert, Magrini, Vincent, McGrath, Sean, Smith, Scott M., Miller, Christopher A., Maher, Christopher A., Payton, Jacqueline E., Walker, Jason R., Eldred, James M., Walter, Matthew J., Link, Daniel C., Graubert, Timothy A., Westervelt, Peter, Kulkarni, Shashikant, DiPersio, John F., Mardis, Elaine R., Wilson, Richard K., Ley, Timothy J.
প্রকাশিত Exp Hematol (2016)

Neoadjuvant and Adjuvant Pembrolizumab in Resectable Locally Advanced, Human Papillomavirus-Unrelated Head and Neck Cancer: A Multicenter, Phase 2 Trial

অনুযায়ী Uppaluri, Ravindra, Campbell, Katie M., Egloff, Ann Marie, Zolkind, Paul, Skidmore, Zachary L., Nussenbaum, Brian, Paniello, Randal C., Rich, Jason T., Jackson, Ryan, Pipkorn, Patrik, Michel, Loren P., Ley, Jessica, Oppelt, Peter, Dunn, Gavin P., Barnell, Erica K., Spies, Nicholas C., Lin, Tianxiang, Li, Tiantian, Mulder, David T., Hanna, Youstina, Cirlan, Iulia, Pugh, Trevor J., Mudianto, Tenny, Riley, Rachel, Zhou, Liye, Jo, Vickie, Stachler, Matthew, Hanna, Glenn J., Kass, Jason, Haddad, Robert, Schoenfeld, Jonathan D., Gjini, Evisa, Lako, Ana, Thorstad, Wade, Gay, Hiram A., Daly, Mackenzie, Rodig, Scott J., Hagemann, Ian S., Kallogjeri, Dorina, Piccirillo, Jay F., Chernock, Rebecca D., Griffith, Malachi, Griffith, Obi L., Adkins, Douglas R.
প্রকাশিত Clin Cancer Res (2020)

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

অনুযায়ী Griffith, Malachi, Spies, Nicholas C, Krysiak, Kilannin, McMichael, Joshua F, Coffman, Adam C, Danos, Arpad M, Ainscough, Benjamin J, Ramirez, Cody A, Rieke, Damian T, Kujan, Lynzey, Barnell, Erica K, Wagner, Alex H, Skidmore, Zachary L, Wollam, Amber, Liu, Connor J, Jones, Martin R, Bilski, Rachel L, Lesurf, Robert, Feng, Yan-Yang, Shah, Nakul M, Bonakdar, Melika, Trani, Lee, Matlock, Matthew, Ramu, Avinash, Campbell, Katie M, Spies, Gregory C, Graubert, Aaron P, Gangavarapu, Karthik, Eldred, James M, Larson, David E, Walker, Jason R, Good, Benjamin M, Wu, Chunlei, Su, Andrew I, Dienstmann, Rodrigo, Margolin, Adam A, Tamborero, David, Lopez-Bigas, Nuria, Jones, Steven J M, Bose, Ron, Spencer, David H, Wartman, Lukas D, Wilson, Richard K, Mardis, Elaine R, Griffith, Obi L
প্রকাশিত Nat Genet (2017)

Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element

অনুযায়ী Leung, Wilson, Shaffer, Christopher D., Chen, Elizabeth J., Quisenberry, Thomas J., Ko, Kevin, Braverman, John M., Giarla, Thomas C., Mortimer, Nathan T., Reed, Laura K., Smith, Sheryl T., Robic, Srebrenka, McCartha, Shannon R., Perry, Danielle R., Prescod, Lindsay M., Sheppard, Zenyth A., Saville, Ken J., McClish, Allison, Morlock, Emily A., Sochor, Victoria R., Stanton, Brittney, Veysey-White, Isaac C., Revie, Dennis, Jimenez, Luis A., Palomino, Jennifer J., Patao, Melissa D., Patao, Shane M., Himelblau, Edward T., Campbell, Jaclyn D., Hertz, Alexandra L., McEvilly, Maddison F., Wagner, Allison R., Youngblom, James, Bedi, Baljit, Bettincourt, Jeffery, Duso, Erin, Her, Maiye, Hilton, William, House, Samantha, Karimi, Masud, Kumimoto, Kevin, Lee, Rebekah, Lopez, Darryl, Odisho, George, Prasad, Ricky, Robbins, Holly Lyn, Sandhu, Tanveer, Selfridge, Tracy, Tsukashima, Kara, Yosif, Hani, Kokan, Nighat P., Britt, Latia, Zoellner, Alycia, Spana, Eric P., Chlebina, Ben T., Chong, Insun, Friedman, Harrison, Mammo, Danny A., Ng, Chun L., Nikam, Vinayak S., Schwartz, Nicholas U., Xu, Thomas Q., Burg, Martin G., Batten, Spencer M., Corbeill, Lindsay M., Enoch, Erica, Ensign, Jesse J., Franks, Mary E., Haiker, Breanna, Ingles, Judith A., Kirkland, Lyndsay D., Lorenz-Guertin, Joshua M., Matthews, Jordan, Mittig, Cody M., Monsma, Nicholaus, Olson, Katherine J., Perez-Aragon, Guillermo, Ramic, Alen, Ramirez, Jordan R., Scheiber, Christopher, Schneider, Patrick A., Schultz, Devon E., Simon, Matthew, Spencer, Eric, Wernette, Adam C., Wykle, Maxine E., Zavala-Arellano, Elizabeth, McDonald, Mitchell J., Ostby, Kristine, Wendland, Peter, DiAngelo, Justin R., Ceasrine, Alexis M., Cox, Amanda H., Docherty, James E.B., Gingras, Robert M., Grieb, Stephanie M., Pavia, Michael J., Personius, Casey L., Polak, Grzegorz L., Beach, Dale L., Cerritos, Heaven L., Horansky, Edward A., Sharif, Karim A., Moran, Ryan, Parrish, Susan, Bickford, Kirsten, Bland, Jennifer, Broussard, Juliana, Campbell, Kerry, Deibel, Katelynn E., Forka, Richard, Lemke, Monika C., Nelson, Marlee B., O'Keeffe, Catherine, Ramey, S. Mariel, Schmidt, Luke, Villegas, Paola, Jones, Christopher J., Christ, Stephanie L., Mamari, Sami, Rinaldi, Adam S., Stity, Ghazal, Hark, Amy T., Scheuerman, Mark, Silver Key, S. Catherine, McRae, Briana D., Haberman, Adam S., Asinof, Sam, Carrington, Harriette, Drumm, Kelly, Embry, Terrance, McGuire, Richard, Miller-Foreman, Drew, Rosen, Stella, Safa, Nadia, Schultz, Darrin, Segal, Matt, Shevin, Yakov, Svoronos, Petros, Vuong, Tam, Skuse, Gary, Paetkau, Don W., Bridgman, Rachael K., Brown, Charlotte M., Carroll, Alicia R., Gifford, Francesca M., Gillespie, Julie Beth, Herman, Susan E., Holtcamp, Krystal L., Host, Misha A., Hussey, Gabrielle, Kramer, Danielle M., Lawrence, Joan Q., Martin, Madeline M., Niemiec, Ellen N., O'Reilly, Ashleigh P., Pahl, Olivia A., Quintana, Guadalupe, Rettie, Elizabeth A.S., Richardson, Torie L., Rodriguez, Arianne E., Rodriguez, Mona O., Schiraldi, Laura, Smith, Joanna J., Sugrue, Kelsey F., Suriano, Lindsey J., Takach, Kaitlyn E., Vasquez, Arielle M., Velez, Ximena, Villafuerte, Elizabeth J., Vives, Laura T., Zellmer, Victoria R., Hauke, Jeanette, Hauser, Charles R., Barker, Karolyn, Cannon, Laurie, Parsamian, Perouza, Parsons, Samantha, Wichman, Zachariah, Bazinet, Christopher W., Johnson, Diana E., Bangura, Abubakarr, Black, Jordan A., Chevee, Victoria, Einsteen, Sarah A., Hilton, Sarah K., Kollmer, Max, Nadendla, Rahul, Stamm, Joyce, Fafara-Thompson, Antoinette E., Gygi, Amber M., Ogawa, Emmy E., Van Camp, Matt, Kocsisova, Zuzana, Leatherman, Judith L., Modahl, Cassie M., Rubin, Michael R., Apiz-Saab, Susana S., Arias-Mejias, Suzette M., Carrion-Ortiz, Carlos F., Claudio-Vazquez, Patricia N., Espada-Green, Debbie M., Feliciano-Camacho, Marium, Gonzalez-Bonilla, Karina M., Taboas-Arroyo, Mariela, Vargas-Franco, Dorianmarie, Montañez-Gonzalez, Raquel, Perez-Otero, Joseph, Rivera-Burgos, Myrielis, Rivera-Rosario, Francisco J., Eisler, Heather L., Alexander, Jackie, Begley, Samatha K., Gabbard, Deana, Allen, Robert J., Aung, Wint Yan, Barshop, William D., Boozalis, Amanda, Chu, Vanessa P., Davis, Jeremy S., Duggal, Ryan N., Franklin, Robert, Gavinski, Katherine, Gebreyesus, Heran, Gong, Henry Z., Greenstein, Rachel A., Guo, Averill D., Hanson, Casey, Homa, Kaitlin E., Hsu, Simon C., Huang, Yi, Huo, Lucy, Jacobs, Sarah, Jia, Sasha, Jung, Kyle L., Wai-Chee Kong, Sarah, Kroll, Matthew R., Lee, Brandon M., Lee, Paul F., Levine, Kevin M., Li, Amy S., Liu, Chengyu, Liu, Max Mian, Lousararian, Adam P., Lowery, Peter B., Mallya, Allyson P., Marcus, Joseph E., Ng, Patrick C., Nguyen, Hien P., Patel, Ruchik, Precht, Hashini, Rastogi, Suchita, Sarezky, Jonathan M., Schefkind, Adam, Schultz, Michael B., Shen, Delia, Skorupa, Tara, Spies, Nicholas C., Stancu, Gabriel, Vivian Tsang, Hiu Man, Turski, Alice L., Venkat, Rohit, Waldman, Leah E., Wang, Kaidi, Wang, Tracy, Wei, Jeffrey W., Wu, Dennis Y., Xiong, David D., Yu, Jack, Zhou, Karen, McNeil, Gerard P., Fernandez, Robert W., Menzies, Patrick Gomez, Gu, Tingting, Buhler, Jeremy, Mardis, Elaine R., Elgin, Sarah C.R.
প্রকাশিত G3 (Bethesda) (2017)