Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks

ανά Hodzic, Ermin, Shrestha, Raunak, Zhu, Kaiyuan, Cheng, Kuoyuan, Collins, Colin C, Cenk Sahinalp, S
Τόπος έκδοσης Gigascience (2019)

Identification of conserved evolutionary trajectories in tumors

ανά Hodzic, Ermin, Shrestha, Raunak, Malikic, Salem, Collins, Colin C, Litchfield, Kevin, Turajlic, Samra, Sahinalp, S Cenk
Τόπος έκδοσης Bioinformatics (2020)

A Meta-Analysis Approach for Characterizing Pan-Cancer Mechanisms of Drug Sensitivity in Cell Lines

ανά Wang, Kendric, Shrestha, Raunak, Wyatt, Alexander W., Reddy, Anupama, Lehár, Joseph, Wang, Yuzhou, Lapuk, Anna, Collins, Colin C.
Έκδοση 2014

HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology

ανά Shrestha, Raunak, Hodzic, Ermin, Sauerwald, Thomas, Dao, Phuong, Wang, Kendric, Yeung, Jake, Anderson, Shawn, Vandin, Fabio, Haffari, Gholamreza, Collins, Colin C., Sahinalp, S. Cenk
Τόπος έκδοσης Genome Res (2017)

Well-Differentiated Papillary Mesothelioma of the Peritoneum Is Genetically Distinct from Malignant Mesothelioma

ανά Shrestha, Raunak, Nabavi, Noushin, Volik, Stanislav, Anderson, Shawn, Haegert, Anne, McConeghy, Brian, Sar, Funda, Brahmbhatt, Sonal, Bell, Robert, Le Bihan, Stephane, Wang, Yuzhuo, Collins, Colin, Churg, Andrew
Τόπος έκδοσης Cancers (Basel) (2020)

Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma

ανά D’Costa, Ninadh M., Cina, Davide, Shrestha, Raunak, Bell, Robert H., Lin, Yen-Yi, Asghari, Hossein, Monjaras-Avila, Cesar U., Kollmannsberger, Christian, Hach, Faraz, Chavez-Munoz, Claudia I., So, Alan I.
Τόπος έκδοσης Sci Rep (2020)

High-throughput detection of RNA processing in bacteria

ανά Gill, Erin E., Chan, Luisa S., Winsor, Geoffrey L., Dobson, Neil, Lo, Raymond, Ho Sui, Shannan J., Dhillon, Bhavjinder K., Taylor, Patrick K., Shrestha, Raunak, Spencer, Cory, Hancock, Robert E. W., Unrau, Peter J., Brinkman, Fiona S. L.
Τόπος έκδοσης BMC Genomics (2018)

Y-box binding protein-1 is crucial in acquired drug resistance development in metastatic clear-cell renal cell carcinoma

ανά D’Costa, Ninadh M., Lowerison, Matthew R., Raven, Peter A., Tan, Zheng, Roberts, Morgan E., Shrestha, Raunak, Urban, Matthew W., Monjaras-Avila, Cesar U., Oo, Htoo Zarni, Hurtado-Coll, Antonio, Chavez-Munoz, Claudia, So, Alan I.
Τόπος έκδοσης J Exp Clin Cancer Res (2020)

An integrated functional and clinical genomics approach reveals genes driving aggressive metastatic prostate cancer

ανά Das, Rajdeep, Sjöström, Martin, Shrestha, Raunak, Yogodzinski, Christopher, Egusa, Emily A., Chesner, Lisa N., Chen, William S., Chou, Jonathan, Dang, Donna K., Swinderman, Jason T., Ge, Alex, Hua, Junjie T., Kabir, Shaheen, Quigley, David A., Small, Eric J., Ashworth, Alan, Feng, Felix Y., Gilbert, Luke A.
Τόπος έκδοσης Nat Commun (2021)

Pathway and network analysis of more than 2500 whole cancer genomes

ανά Reyna, Matthew A., Haan, David, Paczkowska, Marta, Verbeke, Lieven P. C., Vazquez, Miguel, Kahraman, Abdullah, Pulido-Tamayo, Sergio, Barenboim, Jonathan, Wadi, Lina, Dhingra, Priyanka, Shrestha, Raunak, Getz, Gad, Lawrence, Michael S., Pedersen, Jakob Skou, Rubin, Mark A., Wheeler, David A., Brunak, Søren, Izarzugaza, Jose M. G., Khurana, Ekta, Marchal, Kathleen, von Mering, Christian, Sahinalp, S. Cenk, Valencia, Alfonso, Reimand, Jüri, Stuart, Joshua M., Raphael, Benjamin J.
Τόπος έκδοσης Nat Commun (2020)

Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer

ανά Wyatt, Alexander W, Mo, Fan, Wang, Kendric, McConeghy, Brian, Brahmbhatt, Sonal, Jong, Lina, Mitchell, Devon M, Johnston, Rebecca L, Haegert, Anne, Li, Estelle, Liew, Janet, Yeung, Jake, Shrestha, Raunak, Lapuk, Anna V, McPherson, Andrew, Shukin, Robert, Bell, Robert H, Anderson, Shawn, Bishop, Jennifer, Hurtado-Coll, Antonio, Xiao, Hong, Chinnaiyan, Arul M, Mehra, Rohit, Lin, Dong, Wang, Yuzhuo, Fazli, Ladan, Gleave, Martin E, Volik, Stanislav V, Collins, Colin C
Έκδοση 2014

BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma

ανά Shrestha, Raunak, Nabavi, Noushin, Lin, Yen-Yi, Mo, Fan, Anderson, Shawn, Volik, Stanislav, Adomat, Hans H., Lin, Dong, Xue, Hui, Dong, Xin, Shukin, Robert, Bell, Robert H., McConeghy, Brian, Haegert, Anne, Brahmbhatt, Sonal, Li, Estelle, Oo, Htoo Zarni, Hurtado-Coll, Antonio, Fazli, Ladan, Zhou, Joshua, McConnell, Yarrow, McCart, Andrea, Lowy, Andrew, Morin, Gregg B., Chen, Tianhui, Daugaard, Mads, Sahinalp, S. Cenk, Hach, Faraz, Le Bihan, Stephane, Gleave, Martin E., Wang, Yuzhuo, Churg, Andrew, Collins, Colin C.
Τόπος έκδοσης Genome Med (2019)

Autoantibody landscape in patients with advanced prostate cancer

ανά Chen, William S., Haynes, Winston A., Waitz, Rebecca, Kamath, Kathy, Vega-Crespo, Agustin, Shrestha, Raunak, Zhang, Minlu, Foye, Adam, Carretero, Ignacio Baselga, Perez, Ivan Garcilazo, Zhang, Meng, Zhao, Shuang G., Sjöström, Martin, Quigley, David A., Chou, Jonathan, Beer, Tomasz M., Rettig, Matthew, Gleave, Martin, Evans, Christopher P., Lara, Primo, Chi, Kim N., Reiter, Robert E., Alumkal, Joshi J., Ashworth, Alan, Aggarwal, Rahul, Small, Eric J., Daugherty, Patrick S., Ribas, Antoni, Oh, David Y., Shon, John C., Feng, Felix Y.
Τόπος έκδοσης Clin Cancer Res (2020)