Escherichia coli O157:H7 Shiga Toxin-Encoding Bacteriophages: Integrations, Excisions, Truncations, and Evolutionary Implications

by Shaikh, Nurmohammad, Tarr, Phillip I.
Published 2003

Escherichia coli O157:H7 Shiga Toxin-Encoding Bacteriophages: Integrations, Excisions, Truncations, and Evolutionary Implications

by Shaikh, Nurmohammad, Tarr, Phillip I.
Published 2003

Further evidence of constrained radiation in the evolution of pathogenic Escherichia coli O157:H7

by Leopold, Shana R., Shaikh, Nurmohammad, Tarr, Phillip I.
Published 2010

Droplet digital PCR quantifies host inflammatory transcripts in feces reliably and reproducibly

by Stauber, Jennifer, Shaikh, Nurmohammad, Ordiz, M Isabel, Tarr, Phillip I., Manary, Mark J
Published in Cell Immunol (2016)

EB 2017 Article: Interpretation of the lactulose:mannitol test in rural Malawian children at risk for perturbations in intestinal permeability

by Ordiz, M Isabel, Davitt, Caroline, Stephenson, Kevin, Agapova, Sophia, Divala, Oscar, Shaikh, Nurmohammad, Manary, Mark J
Published in Exp Biol Med (Maywood) (2018)

The IrgA Homologue Adhesin Iha Is an Escherichia coli Virulence Factor in Murine Urinary Tract Infection

by Johnson, James R., Jelacic, Srdjan, Schoening, Laura M., Clabots, Connie, Shaikh, Nurmohammad, Mobley, Harry L. T., Tarr, Phillip I.
Published 2005

Serologic Evidence of Gut-driven Systemic Inflammation in Juvenile Idiopathic Arthritis

by Fotis, Lampros, Shaikh, Nurmohammad, Baszis, Kevin W., Samson, Charles M., Lev-Tzion, Raffi, French, Anthony R., Tarr, Phillip I.
Published in J Rheumatol (2017)

A Method for Isolating and Analyzing Human mRNA from Newborn Stool

by Bennett, William E., González-Rivera, Rosbel, Shaikh, Nurmohammad, Magrini, Vincent, Boykin, Michelle, Warner, Barbara B., Hamvas, Aaron, Tarr, Phillip I.
Published 2009

Development of an enhanced human gastrointestinal epithelial culture system to facilitate patient-based assays

by VanDussen, Kelli L, Marinshaw, Jeffrey M, Shaikh, Nurmohammad, Miyoshi, Hiroyuki, Moon, Clara, Tarr, Phillip I, Ciorba, Matthew A, Stappenbeck, Thaddeus S
Published in Gut (2014)

Environmental Enteric Dysfunction Is Associated With Poor Linear Growth and Can Be Identified by Host Fecal mRNAs

by Ordiz, Maria Isabel, Shaikh, Nurmohammad, Trehan, Indi, Maleta, Ken, Stauber, Jennifer, Shulman, Robert, Devaraj, Sridevi, Tarr, Phillip I., Manary, Mark J.
Published in J Pediatr Gastroenterol Nutr (2016)

Environmental Enteric Dysfunction Includes a Broad Spectrum of Inflammatory Responses and Epithelial Repair Processes

by Yu, Jinsheng, Ordiz, M. Isabel, Stauber, Jennifer, Shaikh, Nurmohammad, Trehan, Indi, Barnell, Erica, Head, Richard D., Maleta, Ken, Tarr, Phillip I., Manary, Mark J.
Published in Cell Mol Gastroenterol Hepatol (2015)

Greater Diversity of Shiga Toxin-Encoding Bacteriophage Insertion Sites among Escherichia coli O157:H7 Isolates from Cattle than in Those from Humans

by Besser, Thomas E., Shaikh, Nurmohammad, Holt, Nicholas J., Tarr, Phillip I., Konkel, Michael E., Malik-Kale, Preeti, Walsh, Coilin W., Whittam, Thomas S., Bono, James L.
Published 2007

Greater Diversity of Shiga Toxin-Encoding Bacteriophage Insertion Sites among Escherichia coli O157:H7 Isolates from Cattle than in Those from Humans

by Besser, Thomas E., Shaikh, Nurmohammad, Holt, Nicholas J., Tarr, Phillip I., Konkel, Michael E., Malik-Kale, Preeti, Walsh, Coilin W., Whittam, Thomas S., Bono, James L.
Published 2008

Bacterial DNA Content in the Intestinal Wall from Infants with Necrotizing Enterocolitis

by Bucher, Brian T., McDuffie, Lucas A., Shaikh, Nurmohammad, Tarr, Phillip I., Warner, Barbara B., Hamvas, Aaron, White, Francis V., Erwin, Christopher R., Warner, Brad W.
Published 2011

Precise Dissection of an Escherichia coli O157:H7 Outbreak by Single Nucleotide Polymorphism Analysis

by Turabelidze, George, Lawrence, Steven J., Gao, Hongyu, Sodergren, Erica, Weinstock, George M., Abubucker, Sahar, Wylie, Todd, Mitreva, Makedonka, Shaikh, Nurmohammad, Gautom, Romesh, Tarr, Phillip I.
Published 2013

Phenotypic and Genotypic Analysis of Clostridium difficile Isolates: a Single-Center Study

by Zhou, Yanjiao, Burnham, Carey-Ann D., Hink, Tiffany, Chen, Lei, Shaikh, Nurmohammad, Wollam, Aye, Sodergren, Erica, Weinstock, George M., Tarr, Phillip I., Dubberke, Erik R.
Published in J Clin Microbiol (2014)

Transcriptomic analysis of enteropathy in Zambian children with severe acute malnutrition

by Chama, Mubanga, Amadi, Beatrice C., Chandwe, Kanta, Zyambo, Kanekwa, Besa, Ellen, Shaikh, Nurmohammad, Ndao, I. Malick, Tarr, Philip I., Storer, Chad, Head, Richard, Kelly, Paul
Published in EBioMedicine (2019)

Epithelial IDO1 Modulates AHR and Notch Signaling to Increase Differentiation of Secretory Cells and Alter Mucus-Associated Microbiota

by Alvarado, David M, Chen, Baosheng, Iticovici, Micah, Thaker, Ameet I, Dai, Nattalie, VanDussen, Kelli L, Shaikh, Nurmohammad, Lim, Chai K, Guillemin, Gilles J, Tarr, Phillip I, Ciorba, Matthew A
Published in Gastroenterology (2019)

Transdermal fluorescence detection of a dual fluorophore system for noninvasive point-of-care gastrointestinal permeability measurement

by Dorshow, Richard B., Johnson, J. R., Debreczeny, Martin P., Riley, I. Rochelle, Shieh, Jeng-Jong, Rogers, Thomas E., Hall-Moore, Carla, Shaikh, Nurmohammad, Rouggly-Nickless, L. Colleen, Tarr, Phillip I.
Published in Biomed Opt Express (2019)

Proinflammatory fecal mRNA and childhood bacterial enteric infections

by Bennett, William E, González-Rivera, Rosbel, Puente, Bao N, Shaikh, Nurmohammad, Stevens, Harold J, Mooney, Jody C, Klein, Eileen J, Denno, Donna M, Draghi, Andrew, Sylvester, Francisco A, Tarr, Phillip I
Published 2010