ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences

Autor Pesole Graziano, Rizzi Raffaella, Bonizzoni Paola
Vydáno 2005-10-01

ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences

Autor Bonizzoni, Paola, Rizzi, Raffaella, Pesole, Graziano
Vydáno 2005

Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs

Autor Beretta, Stefano, Bonizzoni, Paola, Vedova, Gianluca Della, Pirola, Yuri, Rizzi, Raffaella
Vydáno 2014

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

Autor Pirola, Yuri, Rizzi, Raffaella, Picardi, Ernesto, Pesole, Graziano, Della Vedova, Gianluca, Bonizzoni, Paola
Vydáno 2012

ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events

Autor Denti, Luca, Rizzi, Raffaella, Beretta, Stefano, Vedova, Gianluca Della, Previtali, Marco, Bonizzoni, Paola
Vydáno v BMC Bioinformatics (2018)

Shark: fishing relevant reads in an RNA-Seq sample

Autor Denti, Luca, Pirola, Yuri, Previtali, Marco, Ceccato, Tamara, Della Vedova, Gianluca, Rizzi, Raffaella, Bonizzoni, Paola
Vydáno v Bioinformatics (2020)

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization

Autor Castrignanò, Tiziana, Rizzi, Raffaella, Talamo, Ivano Giuseppe, De Meo, Paolo D'Onorio, Anselmo, Anna, Bonizzoni, Paola, Pesole, Graziano
Vydáno 2006

Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis

Autor Palorini, Roberta, Votta, Giuseppina, Pirola, Yuri, De Vitto, Humberto, De Palma, Sara, Airoldi, Cristina, Vasso, Michele, Ricciardiello, Francesca, Lombardi, Pietro Paolo, Cirulli, Claudia, Rizzi, Raffaella, Nicotra, Francesco, Hiller, Karsten, Gelfi, Cecilia, Alberghina, Lilia, Chiaradonna, Ferdinando
Vydáno v PLoS Genet (2016)

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

Autor Martelli, Pier L., D’Antonio, Mattia, Bonizzoni, Paola, Castrignanò, Tiziana, D’Erchia, Anna M., D’Onorio De Meo, Paolo, Fariselli, Piero, Finelli, Michele, Licciulli, Flavio, Mangiulli, Marina, Mignone, Flavio, Pavesi, Giulio, Picardi, Ernesto, Rizzi, Raffaella, Rossi, Ivan, Valletti, Alessio, Zauli, Andrea, Zambelli, Federico, Casadio, Rita, Pesole, Graziano
Vydáno 2011