MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGG

by Posma, Joram M., Robinette, Steven L., Holmes, Elaine, Nicholson, Jeremy K.
Published 2014

Overweight Is an Independent Risk Factor for Reduced Lung Volumes in Myotonic Dystrophy Type 1

by Seijger, Charlotte G. W., Drost, Gea, Posma, Joram M., van Engelen, Baziel G. M., Heijdra, Yvonne F.
Published in PLoS One (2016)

MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways

by Rodriguez-Martinez, Andrea, Ayala, Rafael, Posma, Joram M, Neves, Ana L, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel
Published in Bioinformatics (2017)

Optimized Phenotypic Biomarker Discovery and Confounder Elimination via Covariate-Adjusted Projection to Latent Structures from Metabolic Spectroscopy Data

by Posma, Joram M., Garcia-Perez, Isabel, Ebbels, Timothy M. D., Lindon, John C., Stamler, Jeremiah, Elliott, Paul, Holmes, Elaine, Nicholson, Jeremy K.
Published in J Proteome Res (2018)

Gut microbial and metabolic profiling reveal the lingering effects of infantile iron deficiency unless treated with iron

by Mayneris-Perxachs, Jordi, Amaral, Wellington, Lubach, Gabriele R., Lyte, Mark, Phillips, Gregory J., Posma, Joram M., Coe, Christopher L., Swann, Jonathan R.
Published in Mol Nutr Food Res (2021)

Urinary metabolic phenotyping the slc26a6 (chloride-oxalate exchanger) null mouse model

by Garcia-Perez, Isabel, Villaseñor, Alma, Wijeyesekera, Anisha, Posma, Joram M., Stamler, Jeremiah, Aronson, Peter, Unwin, Robert, Barbas, Coral, Elliott, Paul, Nicholson, Jeremy, Holmes, Elaine
Published 2012

MWASTools: an R/bioconductor package for metabolome-wide association studies

by Rodriguez-Martinez, Andrea, Posma, Joram M, Ayala, Rafael, Neves, Ana L, Anwar, Maryam, Petretto, Enrico, Emanueli, Costanza, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel
Published in Bioinformatics (2018)

Nutriome-metabolome relationships provide insights into dietary intake and metabolism

by Posma, Joram M., Garcia-Perez, Isabel, Frost, Gary, Aljuraiban, Ghadeer S., Chan, Queenie, Van Horn, Linda, Daviglus, Martha, Stamler, Jeremiah, Holmes, Elaine, Elliott, Paul, Nicholson, Jeremy K.
Published in Nat Food (2020)

Integrated Analytical and Statistical Two-Dimensional Spectroscopy Strategy for Metabolite Identification: Application to Dietary Biomarkers

by Posma, Joram M., Garcia-Perez, Isabel, Heaton, James C., Burdisso, Paula, Mathers, John C., Draper, John, Lewis, Matt, Lindon, John C., Frost, Gary, Holmes, Elaine, Nicholson, Jeremy K.
Published in Anal Chem (2017)

pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES (1)H NMR spectra

by Rodriguez-Martinez, Andrea, Ayala, Rafael, Posma, Joram M, Harvey, Nikita, Jiménez, Beatriz, Sonomura, Kazuhiro, Sato, Taka-Aki, Matsuda, Fumihiko, Zalloua, Pierre, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel
Published in Bioinformatics (2019)

Simultaneous analysis of plasma and CSF by NMR and hierarchical models fusion

by Smolinska, Agnieszka, Posma, Joram M., Blanchet, Lionel, Ampt, Kirsten A. M., Attali, Amos, Tuinstra, Tinka, Luider, Theo, Doskocz, Marek, Michiels, Paul J., Girard, Frederic C., Buydens, Lutgarde M. C., Wijmenga, Sybren S.
Published 2012

Urinary metabolic signatures of human adiposity

by Elliott, Paul, Posma, Joram M., Chan, Queenie, Garcia-Perez, Isabel, Wijeyesekera, Anisha, Bictash, Magda, Ebbels, Timothy M. D., Ueshima, Hirotsugu, Zhao, Liancheng, van Horn, Linda, Daviglus, Martha, Stamler, Jeremiah, Holmes, Elaine, Nicholson, Jeremy K.
Published in Sci Transl Med (2015)

Objective assessment of dietary patterns by use of metabolic phenotyping: a randomised, controlled, crossover trial

by Garcia-Perez, Isabel, Posma, Joram M, Gibson, Rachel, Chambers, Edward S, Hansen, Tue H, Vestergaard, Henrik, Hansen, Torben, Beckmann, Manfred, Pedersen, Oluf, Elliott, Paul, Stamler, Jeremiah, Nicholson, Jeremy K, Draper, John, Mathers, John C, Holmes, Elaine, Frost, Gary
Published in Lancet Diabetes Endocrinol (2017)

Performance of metabonomic serum analysis for diagnostics in paediatric tuberculosis

by Andreas, Nicholas J., Basu Roy, Robindra, Gomez-Romero, Maria, Horneffer-van der Sluis, Verena, Lewis, Matthew R., Camuzeaux, Stephane S. M., Jiménez, Beatriz, Posma, Joram M., Tientcheu, Leopold, Egere, Uzochukwu, Sillah, Abdou, Togun, Toyin, Holmes, Elaine, Kampmann, Beate
Published in Sci Rep (2020)

The gut microbiota influences skeletal muscle mass and function in mice

by Lahiri, Shawon, Kim, Hyejin, Garcia-Perez, Isabel, Reza, Musarrat Maisha, Martin, Katherine A., Kundu, Parag, Cox, Laura M., Selkrig, Joel, Posma, Joram M., Zhang, Hongbo, Padmanabhan, Parasuraman, Moret, Catherine, Gulyás, Balázs, Blaser, Martin J., Auwerx, Johan, Holmes, Elaine, Nicholson, Jeremy, Wahli, Walter, Pettersson, Sven
Published in Sci Transl Med (2019)

Fat, Fiber and Cancer Risk in African Americans and Rural Africans

by O'Keefe, Stephen J.D., Li, Jia V., Lahti, Leo, Ou, Junhai, Carbonero, Franck, Mohammed, Khaled, Posma, Joram M, Kinross, James, Wahl, Elaine, Ruder, Elizabeth, Vipperla, Kishore, Naidoo, Vasudevan, Mtshali, Lungile, Tims, Sebastian, Puylaert, Philippe G.B., DeLany, James, Krasinskas, Alyssa, Benefiel, Ann C., Kaseb, Hatem O., Newton, Keith, Nicholson, Jeremy K., de Vos, Willem M., Gaskins, H. Rex, Zoetendal, Erwin G.
Published in Nat Commun (2015)

A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer

by Ocvirk, Soeren, Wilson, Annette S, Posma, Joram M, Li, Jia V, Koller, Kathryn R, Day, Gretchen M, Flanagan, Christie A, Otto, Jill Evon, Sacco, Pam E, Sacco, Frank D, Sapp, Flora R, Wilson, Amy S, Newton, Keith, Brouard, Faye, DeLany, James P, Behnning, Marissa, Appolonia, Corynn N, Soni, Devavrata, Bhatti, Faheem, Methé, Barbara, Fitch, Adam, Morris, Alison, Gaskins, H Rex, Kinross, James, Nicholson, Jeremy K, Thomas, Timothy K, O'Keefe, Stephen J D
Published in Am J Clin Nutr (2020)

Dietary metabolite profiling brings new insight into the relationship between nutrition and metabolic risk: An IMI DIRECT study

by Eriksen, Rebeca, Perez, Isabel Garcia, Posma, Joram M., Haid, Mark, Sharma, Sapna, Prehn, Cornelia, Thomas, Louise E., Koivula, Robert W., Bizzotto, Roberto, Prehn, Cornelia, Mari, Andrea, Giordano, Giuseppe N., Pavo, Imre, Schwenk, Jochen M., De Masi, Federico, Tsirigos, Konstantinos D., Brunak, Søren, Viñuela, Ana, Mahajan, Anubha, McDonald, Timothy J., Kokkola, Tarja, Rutter, Femke, Teare, Harriet, Hansen, Tue H., Fernandez, Juan, Jones, Angus, Jennison, Chris, Walker, Mark, McCarthy, Mark I., Pedersen, Oluf, Ruetten, Hartmut, Forgie, Ian, Bell, Jimmy D., Pearson, Ewan R., Franks, Paul W., Adamski, Jerzy, Holmes, Elaine, Frost, Gary
Published in EBioMedicine (2020)