Covalent bonding in crystals, molecules, and polymers /

Yazar: Phillips, James C.
Baskı/Yayın Bilgisi 1969.

Nano-regime Length Scales Extracted from the First Sharp Diffraction Peak in Non-crystalline SiO(2) and Related Materials: Device Applications

Yazar: Lucovsky, Gerald, Phillips, James C
Baskı/Yayın Bilgisi 2010

A stringent test for hydrophobicity scales: Two proteins with 88% sequence identity but different structure and function

Yazar: Kister, Alexander E., Phillips, James C.
Baskı/Yayın Bilgisi 2008

Why Ubiquitin Has Not Evolved

Yazar: Allan, Douglas C., Phillips, James C.
Yayımlandı Int J Mol Sci (2017)

GPU/CPU Algorithm for Generalized Born/Solvent-Accessible Surface Area Implicit Solvent Calculations

Yazar: Tanner, David E., Phillips, James C., Schulten, Klaus
Baskı/Yayın Bilgisi 2012

Correcting Mesh-Based Force Calculations to Conserve Both Energy and Momentum in Molecular Dynamics Simulations

Yazar: Skeel, Robert D., Hardy, David J., Phillips, James C.
Baskı/Yayın Bilgisi 2007

Parallel Generalized Born Implicit Solvent Calculations with NAMD

Yazar: Tanner, David E., Chan, Kwok-Yan, Phillips, James C., Schulten, Klaus
Baskı/Yayın Bilgisi 2011

Early Experiences Porting the NAMD and VMD Molecular Simulation and Analysis Software to GPU-Accelerated OpenPOWER Platforms

Yazar: Stone, John E., Hynninen, Antti-Pekka, Phillips, James C., Schulten, Klaus
Yayımlandı High Perform Comput (2016) (2016)

Mapping to Irregular Torus Topologies and Other Techniques for Petascale Biomolecular Simulation

Yazar: Phillips, James C., Sun, Yanhua, Jain, Nikhil, Bohm, Eric J., Kalé, Laxmikant V.
Yayımlandı SC Conf Proc (2014)

Molecular Dynamics Simulations of Discoidal Bilayers Assembled from Truncated Human Lipoproteins

Yazar: Shih, Amy Y., Denisov, Ilia G., Phillips, James C., Sligar, Stephen G., Schulten, Klaus
Baskı/Yayın Bilgisi 2005

Structural Basis of Co-translational Quality Control by ArfA and RF2 Binding to Ribosome

Yazar: Zeng, Fuxing, Chen, Yanbo, Remis, Jonathan, Shekhar, Mrinal, Phillips, James C., Tajkhorshid, Emad, Jin, Hong
Yayımlandı Nature (2017)

High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD

Yazar: Jiang, Wei, Hardy, David J., Phillips, James C., MacKerell, Alexander D., Schulten, Klaus, Roux, Benoît
Baskı/Yayın Bilgisi 2011

Multilevel Summation Method for Electrostatic Force Evaluation

Yazar: Hardy, David J., Wu, Zhe, Phillips, James C., Stone, John E., Skeel, Robert D., Schulten, Klaus
Yayımlandı J Chem Theory Comput (2014)

Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads

Yazar: Stone, John E., Hallock, Michael J., Phillips, James C., Peterson, Joseph R., Luthey-Schulten, Zaida, Schulten, Klaus
Yayımlandı IEEE Int Symp Parallel Distrib Process Workshops Phd Forum (2016)

Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems

Yazar: Radak, Brian K., Chipot, Christophe, Suh, Donghyuk, Jo, Sunhwan, Jiang, Wei, Phillips, James C., Schulten, Klaus, Roux, Benoît
Yayımlandı J Chem Theory Comput (2017)

QwikMD — Integrative Molecular Dynamics Toolkit for Novices and Experts

Yazar: Ribeiro, João V., Bernardi, Rafael C., Rudack, Till, Stone, John E., Phillips, James C., Freddolino, Peter L., Schulten, Klaus
Yayımlandı Sci Rep (2016)

Generalized Scalable Multiple Copy Algorithms for Molecular Dynamics Simulations in NAMD

Yazar: Jiang, Wei, Phillips, James C., Huang, Lei, Fajer, Mikolai, Meng, Yilin, Gumbart, James C., Luo, Yun, Schulten, Klaus, Roux, Benoît
Baskı/Yayın Bilgisi 2014

Scalable Molecular Dynamics with NAMD

Yazar: Phillips, James C., Braun, Rosemary, Wang, Wei, Gumbart, James, Tajkhorshid, Emad, Villa, Elizabeth, Chipot, Christophe, Skeel, Robert D., Kalé, Laxmikant, Schulten, Klaus
Baskı/Yayın Bilgisi 2005

The challenges of theory-software translation

Yazar: Jay, Caroline, Haines, Robert, Katz, Daniel S., Carver, Jeffrey C., Gesing, Sandra, Brandt, Steven R., Howison, James, Dubey, Anshu, Phillips, James C., Wan, Hui, Turk, Matthew J.
Yayımlandı F1000Res (2020)

NAMD goes quantum: An integrative suite for QM/MM simulations

Yazar: Melo, Marcelo C. R., Bernardi, Rafael C., Rudack, Till, Scheurer, Maximilian, Riplinger, Christoph, Phillips, James C., Maia, Julio D. C., Rocha, Gerd B., Ribeiro, João V., Stone, John E., Neese, Frank, Schulten, Klaus, Luthey-Schulten, Zaida
Yayımlandı Nat Methods (2018)