Effect of excluded volume on 2D discrete stochastic chemical kinetics

Por Lampoudi, Sotiria, Gillespie, Dan T., Petzold, Linda R.
Publicado em 2009

The multinomial simulation algorithm for discrete stochastic simulation of reaction-diffusion systems

Por Lampoudi, Sotiria, Gillespie, Dan T., Petzold, Linda R.
Publicado em 2009

Refining the weighted stochastic simulation algorithm

Por Gillespie, Dan T., Roh, Min, Petzold, Linda R.
Publicado em 2009

WAVOS: a MATLAB toolkit for wavelet analysis and visualization of oscillatory systems

Por Harang, Richard, Bonnet, Guillaume, Petzold, Linda R
Publicado em 2012

Perspective: Stochastic algorithms for chemical kinetics

Por Gillespie, Daniel T., Hellander, Andreas, Petzold, Linda R.
Publicado em 2013

Validity conditions for stochastic chemical kinetics in diffusion-limited systems

Por Gillespie, Daniel T., Petzold, Linda R., Seitaridou, Effrosyni
Publicado em 2014

Adaptive deployment of model reductions for tau-leaping simulation

Por Wu, Sheng, Fu, Jin, Petzold, Linda R.
Publicado no J Chem Phys (2015)

State-dependent biasing method for importance sampling in the weighted stochastic simulation algorithm

Por Roh, Min K., Gillespie, Dan T., Petzold, Linda R.
Publicado em 2010

On the Inference of Functional Circadian Networks Using Granger Causality

Por Pourzanjani, Arya, Herzog, Erik D., Petzold, Linda R.
Publicado no PLoS One (2015)

Oscillator Model Reduction Preserving the Phase Response: Application to the Circadian Clock

Por Taylor, Stephanie R., Doyle, Francis J., Petzold, Linda R.
Publicado em 2008

Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems

Por Li, Hong, Cao, Yang, Petzold, Linda R., Gillespie, Daniel T.
Publicado em 2007

The Time Dependent Propensity Function for Acceleration of Spatial Stochastic Simulation of Reaction-Diffusion Systems

Por Fu, Jin, Wu, Sheng, Li, Hong, Petzold, Linda R.
Publicado no J Comput Phys (2014)

Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion

Por Golkaram, Mahdi, Hellander, Stefan, Drawert, Brian, Petzold, Linda R.
Publicado no PLoS Comput Biol (2016)

The subtle business of model reduction for stochastic chemical kinetics

Por Gillespie, Dan T., Cao, Yang, Sanft, Kevin R., Petzold, Linda R.
Publicado em 2009

Inferring single-cell gene expression mechanisms using stochastic simulation

Por Daigle, Bernie J., Soltani, Mohammad, Petzold, Linda R., Singh, Abhyudai
Publicado no Bioinformatics (2015)

GillesPy: A Python Package for Stochastic Model Building and Simulation

Por Abel, John H., Drawert, Brian, Hellander, Andreas, Petzold, Linda R.
Publicado no IEEE Life Sci Lett (2016)

Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians

Por Drawert, Brian, Griesemer, Marc, Petzold, Linda R., Briggs, Cheryl J.
Publicado no J R Soc Interface (2017)

Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network

Por Taylor, Stephanie R., Gunawan, Rudiyanto, Petzold, Linda R., Doyle, Francis J.
Publicado em 2008

Automated estimation of rare event probabilities in biochemical systems

Por Daigle, Bernie J., Roh, Min K., Gillespie, Dan T., Petzold, Linda R.
Publicado em 2011

State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events

Por Roh, Min K., Daigle, Bernie J., Gillespie, Dan T., Petzold, Linda R.
Publicado em 2011