Quantitative modeling of gene expression using DNA shape features of binding sites

door Peng, Pei-Chen, Sinha, Saurabh
Gepubliceerd in Nucleic Acids Res (2016)

Incorporating Chromatin Accessibility Data into Sequence-to-Expression Modeling

door Peng, Pei-Chen, Hassan Samee, Md. Abul, Sinha, Saurabh
Gepubliceerd in Biophys J (2015)

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

door Khoueiry, Pierre, Girardot, Charles, Ciglar, Lucia, Peng, Pei-Chen, Gustafson, E Hilary, Sinha, Saurabh, Furlong, Eileen EM
Gepubliceerd in eLife (2017)

The Role of Chromatin Accessibility in cis-Regulatory Evolution

door Peng, Pei-Chen, Khoueiry, Pierre, Girardot, Charles, Reddington, James P, Garfield, David A, Furlong, Eileen E M, Sinha, Saurabh
Gepubliceerd in Genome Biol Evol (2019)

Ovarian Cancer Risk Variants Are Enriched in Histotype-Specific Enhancers and Disrupt Transcription Factor Binding Sites

door Jones, Michelle R., Peng, Pei-Chen, Coetzee, Simon G., Tyrer, Jonathan, Reyes, Alberto Luiz P., Corona, Rosario I., Davis, Brian, Chen, Stephanie, Dezem, Felipe, Seo, Ji-Heui, Kar, Siddartha, Dareng, Eileen, Berman, Benjamin P., Freedman, Matthew L., Plummer, Jasmine T., Lawrenson, Kate, Pharoah, Paul, Hazelett, Dennis J., Gayther, Simon A.
Gepubliceerd in Am J Hum Genet (2020)