The effects of disruption of phosphoglucose isomerase gene on carbon utilisation and cellulase production in Trichoderma reesei Rut-C30

by Limón, M Carmen, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja
Published 2011

The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei

by Häkkinen, Mari, Sivasiddarthan, Dhinakaran, Aro, Nina, Saloheimo, Markku, Pakula, Tiina M
Published in Microb Cell Fact (2015)

Cloning and Characterization of the Glucosidase II Alpha Subunit Gene of Trichoderma reesei: a Frameshift Mutation Results in the Aberrant Glycosylation Profile of the Hypercellulo...

by Geysens, Steven, Pakula, Tiina, Uusitalo, Jaana, Dewerte, Isabelle, Penttilä, Merja, Contreras, Roland
Published 2005

(13)C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

by Jouhten, Paula, Pitkänen, Esa, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja, Maaheimo, Hannu
Published 2009

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties

by Vitikainen, Marika, Arvas, Mikko, Pakula, Tiina, Oja, Merja, Penttilä, Merja, Saloheimo, Markku
Published 2010

TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum

by Gimeno, Alejandro, Sohlberg, Elina, Pakula, Tiina, Limnell, Jenni, Keller, Beat, Laitila, Arja, Vogelgsang, Susanne
Published in Front Microbiol (2019)

Corrigendum: TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum

by Gimeno, Alejandro, Sohlberg, Elina, Pakula, Tiina, Limnell, Jenni, Keller, Beat, Laitila, Arja, Vogelgsang, Susanne
Published in Front Microbiol (2019)

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

by Häkkinen, Mari, Arvas, Mikko, Oja, Merja, Aro, Nina, Penttilä, Merja, Saloheimo, Markku, Pakula, Tiina M
Published 2012

Genome wide analysis of protein production load in Trichoderma reesei

by Pakula, Tiina M., Nygren, Heli, Barth, Dorothee, Heinonen, Markus, Castillo, Sandra, Penttilä, Merja, Arvas, Mikko
Published in Biotechnol Biofuels (2016)

Common features and interesting differences in transcriptional responses to secretion stress in the fungi Trichoderma reesei and Saccharomyces cerevisiae

by Arvas, Mikko, Pakula, Tiina, Lanthaler, Karin, Saloheimo, Markku, Valkonen, Mari, Suortti, Tapani, Robson, Geoff, Penttilä, Merja
Published 2006

Characterization of Secretory Genes ypt1/yptA and nsf1/nsfA from Two Filamentous Fungi: Induction of Secretory Pathway Genes of Trichoderma reesei under Secretion Stress Conditions

by Saloheimo, Markku, Wang, Huaming, Valkonen, Mari, Vasara, Tuija, Huuskonen, Anne, Riikonen, Marjukka, Pakula, Tiina, Ward, Michael, Penttilä, Merja
Published 2004

Machine Learning of Protein Interactions in Fungal Secretory Pathways

by Kludas, Jana, Arvas, Mikko, Castillo, Sandra, Pakula, Tiina, Oja, Merja, Brouard, Céline, Jäntti, Jussi, Penttilä, Merja, Rousu, Juho
Published in PLoS One (2016)

Correlation of gene expression and protein production rate - a system wide study

by Arvas, Mikko, Pakula, Tiina, Smit, Bart, Rautio, Jari, Koivistoinen, Heini, Jouhten, Paula, Lindfors, Erno, Wiebe, Marilyn, Penttilä, Merja, Saloheimo, Markku
Published 2011

Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production

by Häkkinen, Mari, Valkonen, Mari J, Westerholm-Parvinen, Ann, Aro, Nina, Arvas, Mikko, Vitikainen, Marika, Penttilä, Merja, Saloheimo, Markku, Pakula, Tiina M
Published 2014

Transformation System for Hypocrea jecorina (Trichoderma reesei) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers

by Steiger, Matthias G., Vitikainen, Marika, Uskonen, Pekka, Brunner, Kurt, Adam, Gerhard, Pakula, Tiina, Penttilä, Merja, Saloheimo, Markku, Mach, Robert L., Mach-Aigner, Astrid R.
Published 2011

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

by Castillo, Sandra, Barth, Dorothee, Arvas, Mikko, Pakula, Tiina M., Pitkänen, Esa, Blomberg, Peter, Seppanen-Laakso, Tuulikki, Nygren, Heli, Sivasiddarthan, Dhinakaran, Penttilä, Merja, Oja, Merja
Published in Biotechnol Biofuels (2016)

Detecting novel genes with sparse arrays

by Arvas, Mikko, Haiminen, Niina, Smit, Bart, Rautio, Jari, Vitikainen, Marika, Wiebe, Marilyn, Martinez, Diego, Chee, Christine, Kunkel, Joe, Sanchez, Charles, Nelson, Mary Anne, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja, Kivioja, Teemu
Published 2010

The 2008 update of the Aspergillus nidulans genome annotation: a community effort

by Wortman, Jennifer Russo, Gilsenan, Jane Mabey, Joardar, Vinita, Deegan, Jennifer, Clutterbuck, John, Andersen, Mikael R., Archer, David, Bencina, Mojca, Braus, Gerhard, Coutinho, Pedro, von Döhren, Hans, Doonan, John, Driessen, Arnold J.M., Durek, Pawel, Espeso, Eduardo, Fekete, Erzsébet, Flipphi, Michel, Estrada, Carlos Garcia, Geysens, Steven, Goldman, Gustavo, de Groot, Piet W.J., Hansen, Kim, Harris, Steven D., Heinekamp, Thorsten, Helmstaedt, Kerstin, Henrissat, Bernard, Hofmann, Gerald, Homan, Tim, Horio, Tetsuya, Horiuchi, Hiroyuki, James, Steve, Jones, Meriel, Karaffa, Levente, Karányi, Zsolt, Kato, Masashi, Keller, Nancy, Kelly, Diane E., Kiel, Jan A.K.W., Kim, Jung-Mi, van der Klei, Ida J., Klis, Frans M., Kovalchuk, Andriy, Kraševec, Nada, Kubicek, Christian P., Liu, Bo, MacCabe, Andrew, Meyer, Vera, Mirabito, Pete, Miskei, Márton, Mos, Magdalena, Mullins, Jonathan, Nelson, David R., Nielsen, Jens, Oakley, Berl R., Osmani, Stephen A., Pakula, Tiina, Paszewski, Andrzej, Paulsen, Ian, Pilsyk, Sebastian, Pócsi, István, Punt, Peter J., Ram, Arthur F.J., Ren, Qinghu, Robellet, Xavier, Robson, Geoff, Seiboth, Bernhard, Solingen, Piet van, Specht, Thomas, Sun, Jibin, Taheri-Talesh, Naimeh, Takeshita, Norio, Ussery, Dave, vanKuyk, Patricia A., Visser, Hans, van de Vondervoort, Peter J.I., de Vries, Ronald P., Walton, Jonathan, Xiang, Xin, Xiong, Yi, Zeng, An Ping, Brandt, Bernd W., Cornell, Michael J., van den Hondel, Cees A.M.J.J., Visser, Jacob, Oliver, Stephen G., Turner, Geoffrey
Published 2008